Project measure / variable:   Schoonjans1   THDCA_feces_CD

ID, description, units MPD:112798   THDCA_feces_CD   bile acid taurohyodeoxycholic acid amount in feces, at 24 wks   [ng/mL]  CD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   36 strains     sex: m     age: 24wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid taurohyodeoxycholic acid amount in feces, at 24 wks CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested36 strains
Mean of the strain means0.052   ng/mL
Median of the strain means0.05003   ng/mL
SD of the strain means± 0.02644
Coefficient of variation (CV)0.5084
Min–max range of strain means0.0047564   –   0.0979   ng/mL
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 0.1211 0.0035 2.8436 < 0.0001
Residuals 139 0.1691 0.0012


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.05795 0.02019   5 0.00902874 0.3484 0.03351, 0.07954 0.23
BXD100 m 0.07037 0.03853   5 0.01723 0.5474 0.03254, 0.125 0.69
BXD11 m 0.065 0.04874   4 0.02437 0.7499 0.02923, 0.13526 0.49
BXD12 m 0.05031 0.02699   4 0.01349 0.5365 0.02483, 0.07591 -0.06
BXD27 m 0.07997 0.04218   4 0.02109 0.5274 0.0398, 0.13944 1.06
BXD32 m 0.04974 0.03495   4 0.01748 0.7026 0.02442, 0.10074 -0.09
BXD34 m 0.03557 0.01967   4 0.00983492 0.553 0.01335, 0.06086 -0.62
BXD39 m 0.04435 0.02552   5 0.01141 0.5756 0.02634, 0.08907 -0.29
BXD40 m 0.04762 0.02054   5 0.00918418 0.4313 0.01481, 0.06491 -0.17
BXD43 m 0.04079 0.0292   4 0.0146 0.7158 0.00741775, 0.06802 -0.42
BXD45 m 0.09146 0.09557   3 0.05518 1.0449 0.02219, 0.20049 1.49
BXD48 m 0.07216 0.01067   5 0.00476964 0.1478 0.05863, 0.08412 0.76
BXD48a m 0.03348 0.00678277   4 0.00339138 0.2026 0.02409, 0.0386 -0.7
BXD49 m 0.0319 0.01353   5 0.00604956 0.424 0.01482, 0.04722 -0.76
BXD51 m 0.02602 0.01416   5 0.00633049 0.5439 0.01297, 0.04918 -0.98
BXD53 m 0.08085 0.03968   5 0.01775 0.4908 0.04945, 0.14298 1.09
BXD55 m 0.03072 0.01302   5 0.00582152 0.4237 0.01936, 0.05175 -0.81
BXD6 m 0.01156 0.02186   5 0.00977816 1.891 0.00131011, 0.05066 -1.53
BXD62 m 0.02415 0.01207   5 0.00539916 0.4998 0.01316, 0.03782 -1.05
BXD63 m 0.04302 0.03366   5 0.01505 0.7824 0.02174, 0.10177 -0.34
BXD64 m 0.02494 0.0092259   5 0.00412595 0.3699 0.01505, 0.04005 -1.02
BXD66 m 0.01367 0.00661733   5 0.00295936 0.4841 0.00635242, 0.02405 -1.45
BXD67 m 0.0047564 0.00213289   4 0.00106645 0.4484 0.00260534, 0.00681542 -1.79
BXD69 m 0.06952 0.02105   5 0.00941344 0.3028 0.04002, 0.09489 0.66
BXD73 m 0.0979 0.04324   5 0.01934 0.4417 0.03998, 0.14767 1.74
BXD75 m 0.05151 0.02493   5 0.01115 0.484 0.02939, 0.09345 -0.02
BXD77 m 0.02983 0.01082   5 0.00484007 0.3628 0.01562, 0.04154 -0.84
BXD79 m 0.06162 0.02405   5 0.01075 0.3903 0.03494, 0.08759 0.36
BXD8 m 0.09146 0.05715   5 0.02556 0.6249 0.01245, 0.15357 1.49
BXD81 m 0.073 0.04955   5 0.02216 0.6787 0.00064565, 0.13407 0.79
BXD84 m 0.02037 0.00689138   5 0.00308192 0.3383 0.01286, 0.02926 -1.2
BXD87 m 0.07966 0.02073   5 0.00926872 0.2602 0.04865, 0.10463 1.05
BXD89 m 0.08775 0.04098   5 0.01833 0.467 0.04797, 0.14018 1.35
BXD90 m 0.07283 0.10867   5 0.0486 1.4921 0.01395, 0.26661 0.79
C57BL/6J m 0.01719 0.00783768   10 0.00247849 0.4558 0.0008432, 0.02637 -1.32
DBA/2J m 0.08906 0.04023   5 0.01799 0.4517 0.03009, 0.12787 1.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.057946 0.0155988513 0.0887877013 0.0271042987
BXD100 m 0.070374 0.0155988513 0.1012157013 0.0395322987
BXD11 m 0.0649975 0.0174400459 0.0994795703 0.0305154297
BXD12 m 0.050305 0.0174400459 0.0847870703 0.0158229297
BXD27 m 0.0799725 0.0174400459 0.1144545703 0.0454904297
BXD32 m 0.049745 0.0174400459 0.0842270703 0.0152629297
BXD34 m 0.0355725 0.0174400459 0.0700545703 0.0010904297
BXD39 m 0.044346 0.0155988513 0.0751877013 0.0135042987
BXD40 m 0.047616 0.0155988513 0.0784577013 0.0167742987
BXD43 m 0.0407944375 0.0174400459 0.0752765078 0.0063123672
BXD45 m 0.09146 0.0201380304 0.1312764652 0.0516435348
BXD48 m 0.072158 0.0155988513 0.1029997013 0.0413162987
BXD48a m 0.0334825 0.0174400459 0.0679645703 -0.0009995703
BXD49 m 0.031904 0.0155988513 0.0627457013 0.0010622987
BXD51 m 0.026024 0.0155988513 0.0568657013 -0.0048177013
BXD53 m 0.080852 0.0155988513 0.1116937013 0.0500102987
BXD55 m 0.030724 0.0155988513 0.0615657013 -0.0001177013
BXD6 m 0.011562454 0.0155988513 0.0424041553 -0.0192792473
BXD62 m 0.024154 0.0155988513 0.0549957013 -0.0066877013
BXD63 m 0.043024 0.0155988513 0.0738657013 0.0121822987
BXD64 m 0.02494 0.0155988513 0.0557817013 -0.0059017013
BXD66 m 0.013668484 0.0155988513 0.0445101853 -0.0171732173
BXD67 m 0.0047564 0.0174400459 0.0392384703 -0.0297256703
BXD69 m 0.069516 0.0155988513 0.1003577013 0.0386742987
BXD73 m 0.0979 0.0155988513 0.1287417013 0.0670582987
BXD75 m 0.05151 0.0155988513 0.0823517013 0.0206682987
BXD77 m 0.029832 0.0155988513 0.0606737013 -0.0010097013
BXD79 m 0.061616 0.0155988513 0.0924577013 0.0307742987
BXD8 m 0.091462 0.0155988513 0.1223037013 0.0606202987
BXD81 m 0.07300113 0.0155988513 0.1038428313 0.0421594287
BXD84 m 0.020368 0.0155988513 0.0512097013 -0.0104737013
BXD87 m 0.079662 0.0155988513 0.1105037013 0.0488202987
BXD89 m 0.087748 0.0155988513 0.1185897013 0.0569062987
BXD90 m 0.072828 0.0155988513 0.1036697013 0.0419862987
C57BL/6J m 0.017194199 0.0110300535 0.0390025751 -0.0046141771
DBA/2J m 0.089056 0.0155988513 0.1198977013 0.0582142987




  GWAS USING LINEAR MIXED MODELS