Project measure / variable:   Schoonjans1   GUDCA_feces_HFD

ID, description, units MPD:112779   GUDCA_feces_HFD   bile acid glycoursodeoxycholic acid amount in feces, at 24 wks   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   13 strains     sex: m     age: 24wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid glycoursodeoxycholic acid amount in feces, at 24 wks HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested13 strains
Mean of the strain means0.00376688   ng/mL
Median of the strain means0.00228426   ng/mL
SD of the strain means± 0.00389351
Coefficient of variation (CV)1.0336
Min–max range of strain means0.001515   –   0.01573   ng/mL
Mean sample size per strain2.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 6 0.0 0.0 0.9112 0.5167
Residuals 13 0.0001 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.00294259 0.00199788   3 0.00115348 0.679 0.0017126, 0.00524781 -0.21
BXD12 m 0.01573 0.0   1   0.0 0.0 0.01573, 0.01573 3.07
BXD32 m 0.00228426 0.0   1   0.0 0.0 0.00228426, 0.00228426 -0.38
BXD48 m 0.00544236 0.00417992   5 0.00186932 0.768 0.00152439, 0.01091 0.43
BXD48a m 0.00339906 0.00216748   4 0.00108374 0.6377 0.00180118, 0.00655972 -0.09
BXD51 m 0.00217731 0.00068686   2   0.00048568 0.3155 0.00169162, 0.00266299 -0.41
BXD53 m 0.00206949 0.0   1   0.0 0.0 0.00206949, 0.00206949 -0.44
BXD55 m 0.00162804 0.00015184   2   0.00010737 0.0933 0.00152067, 0.00173541 -0.55
BXD73 m 0.00152769 8.685e-05   2   6.142e-05 0.0569 0.00146628, 0.00158911 -0.58
BXD75 m 0.001515 0.0   1   0.0 0.0 0.001515, 0.001515 -0.58
BXD8 m 0.00160714 0.0   1   0.0 0.0 0.00160714, 0.00160714 -0.55
BXD81 m 0.00627596 0.0   1   0.0 0.0 0.00627596, 0.00627596 0.64
BXD89 m 0.00237058 0.0011537   2   0.00081579 0.4867 0.00155479, 0.00318637 -0.36


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.0029425867 0.0015508252 0.0062929409 -0.0004077676
BXD48 m 0.00544236 0.0012012641 0.0080375332 0.0028471868
BXD48a m 0.0033990625 0.001343054 0.0063005544 0.0004975706
BXD51 m 0.002177305 0.0018993653 0.0062806342 -0.0019260242
BXD55 m 0.00162804 0.0018993653 0.0057313692 -0.0024752892
BXD73 m 0.001527695 0.0018993653 0.0056310242 -0.0025756342
BXD89 m 0.00237058 0.0018993653 0.0064739092 -0.0017327492




  GWAS USING LINEAR MIXED MODELS