Project measure / variable:   Schoonjans1   GHDCA_feces_HFD

ID, description, units MPD:112775   GHDCA_feces_HFD   bile acid glycohyodeoxycholic acid amount in feces, at 24 wks   [ng/mL]  HFD  
high-fat diet study
Data set, strains Schoonjans1   BXD w/par   12 strains     sex: m     age: 24wks
Procedure biomarker quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Schoonjans1 - bile acid glycohyodeoxycholic acid amount in feces, at 24 wks HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested12 strains
Mean of the strain means0.00564749   ng/mL
Median of the strain means0.003908   ng/mL
SD of the strain means± 0.00362114
Coefficient of variation (CV)0.6412
Min–max range of strain means0.00221457   –   0.01166   ng/mL
Mean sample size per strain2.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 6 0.0003 0.0 3.1958 0.0374
Residuals 13 0.0002 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.0047695 0.00222129   5 0.00099339 0.4657 0.00250996, 0.00766764 -0.24
BXD12 m 0.01106 0.00710469   2   0.00502378 0.6426 0.00603245, 0.01608 1.49
BXD27 m 0.01112 0.0   1   0.0 0.0 0.01112, 0.01112 1.51
BXD32 m 0.00295575 5.411e-05   2   3.826e-05 0.0183 0.00291749, 0.00299401 -0.74
BXD48 m 0.01166 0.00610945   4 0.00305472 0.5239 0.00600908, 0.02002 1.66
BXD48a m 0.00329626 9.198e-05   2   6.504e-05 0.0279 0.00323122, 0.0033613 -0.65
BXD49 m 0.00345237 6.523e-05   2   4.613e-05 0.0189 0.00340625, 0.0034985 -0.61
BXD63 m 0.00436364 0.0   1   0.0 0.0 0.00436364, 0.00436364 -0.35
BXD81 m 0.00703264 0.0   1   0.0 0.0 0.00703264, 0.00703264 0.38
BXD84 m 0.0032967 0.0   1   0.0 0.0 0.0032967, 0.0032967 -0.65
BXD89 m 0.00221457 0.0   1   0.0 0.0 0.00221457, 0.00221457 -0.95
DBA/2J m 0.00254839 6.596e-05   3 3.808e-05 0.0259 0.00248276, 0.00261468 -0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.004769504 0.001674302 0.0083866136 0.0011523944
BXD12 m 0.011056225 0.0026473039 0.0167753774 0.0053370726
BXD32 m 0.00295575 0.0026473039 0.0086749024 -0.0027634024
BXD48 m 0.011661135 0.0018719266 0.0157051865 0.0076170835
BXD48a m 0.00329626 0.0026473039 0.0090154124 -0.0024228924
BXD49 m 0.003452375 0.0026473039 0.0091715274 -0.0022667774
DBA/2J m 0.0025483933 0.0021615146 0.0072180617 -0.0021212751




  GWAS USING LINEAR MIXED MODELS