Project measure / variable:   Auwerx1   kidney_wt_HFD

ID, description, units MPD:111405   kidney_wt_HFD   kidney weight (both)   [g]  HFD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   56 strains     sex: m     age: 29wks
Procedure organ weights
Ontology mappings

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  STRAIN COMPARISON PLOT
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Auwerx1 - kidney weight (both) HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested56 strains
Mean of the strain means0.53927   g
Median of the strain means0.52185   g
SD of the strain means± 0.10104
Coefficient of variation (CV)0.1874
Min–max range of strain means0.3918   –   1.0155   g
Mean sample size per strain4.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 55 2.3326 0.0424 18.6884 < 0.0001
Residuals 185 0.4198 0.0023


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.458 0.03669   5 0.01641 0.0801 0.408, 0.508 -0.8
BXD100 m 0.52312 0.04239   5 0.01896 0.081 0.4822, 0.5864 -0.16
BXD101 m 0.50475 0.03664   4 0.01832 0.0726 0.4739, 0.5472 -0.34
BXD11 m 0.56165 0.02602   4 0.01301 0.0463 0.5269, 0.588 0.22
BXD12 m 0.4488 0.0316   5 0.01413 0.0704 0.394, 0.471 -0.9
BXD16 m 0.5024 0.04308   5 0.01927 0.0858 0.452, 0.552 -0.36
BXD2 m 0.50044 0.08514   5 0.03808 0.1701 0.3931, 0.594 -0.38
BXD27 m 0.52173 0.01752   3 0.01011 0.0336 0.5038, 0.5388 -0.17
BXD32 m 0.66543 0.06933   3 0.04003 0.1042 0.6114, 0.7436 1.25
BXD34 m 1.0155 0.08184   5 0.0366 0.0806 0.8938, 1.0975 4.71
BXD39 m 0.5094 0.03885   5 0.01737 0.0763 0.47, 0.573 -0.3
BXD40 m 0.45995 0.05992   4 0.02996 0.1303 0.376, 0.512 -0.79
BXD43 m 0.3918 0.03803   3 0.02196 0.0971 0.3494, 0.4229 -1.46
BXD44 m 0.45939 0.08395   7 0.03173 0.1827 0.2982, 0.5625 -0.79
BXD45 m 0.55697 0.04932   4 0.02466 0.0886 0.4887, 0.6012 0.18
BXD48 m 0.42432 0.04403   5 0.01969 0.1038 0.3512, 0.4603 -1.14
BXD48a m 0.55073 0.034   3 0.01963 0.0617 0.5199, 0.5872 0.11
BXD49 m 0.53187 0.09632   4 0.04816 0.1811 0.4664, 0.6709 -0.07
BXD50 m 0.52708 0.02026   5 0.00905872 0.0384 0.4953, 0.5507 -0.12
BXD51 m 0.53758 0.06841   4 0.0342 0.1272 0.4593, 0.6249 -0.02
BXD53 m 0.5941 0.05242   5 0.02344 0.0882 0.542, 0.677 0.54
BXD55 m 0.57645 0.07072   4 0.03536 0.1227 0.4893, 0.6625 0.37
BXD56 m 0.5933 0.01259   2   0.0089 0.0212 0.5844, 0.6022 0.53
BXD6 m 0.4936 0.03591   5 0.01606 0.0727 0.43, 0.517 -0.45
BXD60 m 0.4998 0.03085   5 0.0138 0.0617 0.451, 0.528 -0.39
BXD61 m 0.5057 0.02073   5 0.00926882 0.041 0.4807, 0.5278 -0.33
BXD62 m 0.43038 0.02742   4 0.01371 0.0637 0.4027, 0.4593 -1.08
BXD63 m 0.43915 0.01945   2   0.01375 0.0443 0.4254, 0.4529 -0.99
BXD64 m 0.5038 0.04119   4 0.0206 0.0818 0.4733, 0.5643 -0.35
BXD65 m 0.4829 0.02375   4 0.01187 0.0492 0.462, 0.5057 -0.56
BXD65a m 0.56458 0.02268   4 0.01134 0.0402 0.5385, 0.5904 0.25
BXD66 m 0.53464 0.0186   5 0.0083161 0.0348 0.512, 0.5626 -0.05
BXD67 m 0.5027 0.01845   5 0.0082527 0.0367 0.4812, 0.5316 -0.36
BXD68 m 0.4466 0.03323   3 0.01918 0.0744 0.4126, 0.479 -0.92
BXD69 m 0.5676 0.02181   5 0.00975392 0.0384 0.5314, 0.5902 0.28
BXD70 m 0.79585 0.08139   2   0.05755 0.1023 0.7383, 0.8534 2.54
BXD71 m 0.65863 0.04287   3 0.02475 0.0651 0.6322, 0.7081 1.18
BXD73 m 0.66257 0.03287   4 0.01643 0.0496 0.6152, 0.6866 1.22
BXD73a m 0.48372 0.05072   5 0.02268 0.1049 0.4384, 0.5704 -0.55
BXD73b m 0.52982 0.04607   5 0.0206 0.087 0.4641, 0.5865 -0.09
BXD75 m 0.52792 0.043   5 0.01923 0.0815 0.488, 0.6014 -0.11
BXD77 m 0.49842 0.031   5 0.01387 0.0622 0.4567, 0.5293 -0.4
BXD79 m 0.6158 0.06374   5 0.0285 0.1035 0.5255, 0.6786 0.76
BXD8 m 0.52196 0.03392   5 0.01517 0.065 0.4659, 0.5531 -0.17
BXD81 m 0.47863 0.01657   3 0.00956911 0.0346 0.4606, 0.4932 -0.6
BXD83 m 0.48173 0.03528   4 0.01764 0.0732 0.4379, 0.5226 -0.57
BXD84 m 0.72233 0.0655   3 0.03782 0.0907 0.647, 0.7658 1.81
BXD85 m 0.54153 0.03789   4 0.01895 0.07 0.5023, 0.5933 0.02
BXD87 m 0.44434 0.03478   5 0.01555 0.0783 0.4205, 0.5059 -0.94
BXD89 m 0.5959 0.0371   4 0.01855 0.0623 0.551, 0.633 0.56
BXD90 m 0.48317 0.03267   4 0.01633 0.0676 0.4377, 0.5135 -0.56
BXD95 m 0.5372 0.0534   5 0.02388 0.0994 0.478, 0.605 -0.02
BXD98 m 0.57034 0.02624   5 0.01174 0.046 0.5345, 0.6047 0.31
BXD99 m 0.51252 0.03957   5 0.0177 0.0772 0.4577, 0.5679 -0.26
C57BL/6J m 0.44622 0.04961   5 0.02219 0.1112 0.395, 0.5229 -0.92
DBA/2J m 0.70436 0.07455   5 0.03334 0.1058 0.5958, 0.794 1.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.458 0.0213043085 0.5000306299 0.4159693701
BXD100 m 0.52312 0.0213043085 0.5651506299 0.4810893701
BXD101 m 0.50475 0.023818941 0.5517416728 0.4577583272
BXD11 m 0.56165 0.023818941 0.6086416728 0.5146583272
BXD12 m 0.4488 0.0213043085 0.4908306299 0.4067693701
BXD16 m 0.5024 0.0213043085 0.5444306299 0.4603693701
BXD2 m 0.50044 0.0213043085 0.5424706299 0.4584093701
BXD27 m 0.5217333333 0.027503744 0.5759946432 0.4674720235
BXD32 m 0.6654333333 0.027503744 0.7196946432 0.6111720235
BXD34 m 1.01546 0.0213043085 1.0574906299 0.9734293701
BXD39 m 0.5094 0.0213043085 0.5514306299 0.4673693701
BXD40 m 0.45995 0.023818941 0.5069416728 0.4129583272
BXD43 m 0.3918 0.027503744 0.4460613099 0.3375386901
BXD44 m 0.4593857143 0.0180054269 0.49490808 0.4238633486
BXD45 m 0.556975 0.023818941 0.6039666728 0.5099833272
BXD48 m 0.42432 0.0213043085 0.4663506299 0.3822893701
BXD48a m 0.5507333333 0.027503744 0.6049946432 0.4964720235
BXD49 m 0.531875 0.023818941 0.5788666728 0.4848833272
BXD50 m 0.52708 0.0213043085 0.5691106299 0.4850493701
BXD51 m 0.537575 0.023818941 0.5845666728 0.4905833272
BXD53 m 0.5941 0.0213043085 0.6361306299 0.5520693701
BXD55 m 0.57645 0.023818941 0.6234416728 0.5294583272
BXD56 m 0.5933 0.0336850694 0.659756261 0.526843739
BXD6 m 0.4936 0.0213043085 0.5356306299 0.4515693701
BXD60 m 0.4998 0.0213043085 0.5418306299 0.4577693701
BXD61 m 0.5057 0.0213043085 0.5477306299 0.4636693701
BXD62 m 0.430375 0.023818941 0.4773666728 0.3833833272
BXD63 m 0.43915 0.0336850694 0.505606261 0.372693739
BXD64 m 0.5038 0.023818941 0.5507916728 0.4568083272
BXD65 m 0.4829 0.023818941 0.5298916728 0.4359083272
BXD65a m 0.564575 0.023818941 0.6115666728 0.5175833272
BXD66 m 0.53464 0.0213043085 0.5766706299 0.4926093701
BXD67 m 0.5027 0.0213043085 0.5447306299 0.4606693701
BXD68 m 0.4466 0.027503744 0.5008613099 0.3923386901
BXD69 m 0.5676 0.0213043085 0.6096306299 0.5255693701
BXD70 m 0.79585 0.0336850694 0.862306261 0.729393739
BXD71 m 0.6586333333 0.027503744 0.7128946432 0.6043720235
BXD73 m 0.662575 0.023818941 0.7095666728 0.6155833272
BXD73a m 0.48372 0.0213043085 0.5257506299 0.4416893701
BXD73b m 0.52982 0.0213043085 0.5718506299 0.4877893701
BXD75 m 0.52792 0.0213043085 0.5699506299 0.4858893701
BXD77 m 0.49842 0.0213043085 0.5404506299 0.4563893701
BXD79 m 0.6158 0.0213043085 0.6578306299 0.5737693701
BXD8 m 0.52196 0.0213043085 0.5639906299 0.4799293701
BXD81 m 0.4786333333 0.027503744 0.5328946432 0.4243720235
BXD83 m 0.481725 0.023818941 0.5287166728 0.4347333272
BXD84 m 0.7223333333 0.027503744 0.7765946432 0.6680720235
BXD85 m 0.541525 0.023818941 0.5885166728 0.4945333272
BXD87 m 0.44434 0.0213043085 0.4863706299 0.4023093701
BXD89 m 0.5959 0.023818941 0.6428916728 0.5489083272
BXD90 m 0.483175 0.023818941 0.5301666728 0.4361833272
BXD95 m 0.5372 0.0213043085 0.5792306299 0.4951693701
BXD98 m 0.57034 0.0213043085 0.6123706299 0.5283093701
BXD99 m 0.51252 0.0213043085 0.5545506299 0.4704893701
C57BL/6J m 0.44622 0.0213043085 0.4882506299 0.4041893701
DBA/2J m 0.70436 0.0213043085 0.7463906299 0.6623293701




  GWAS USING LINEAR MIXED MODELS