Project measure / variable:   Auwerx1   hdl_HFD

ID, description, units MPD:111359   hdl_HFD   blood HDL amount   [mmol/L]  HFD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   52 strains     sex: m     age: 29wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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Auwerx1 - blood HDL amount HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested52 strains
Mean of the strain means3.7192   mmol/L
Median of the strain means3.951   mmol/L
SD of the strain means± 1.2129
Coefficient of variation (CV)0.3261
Min–max range of strain means1.366   –   6.115   mmol/L
Mean sample size per strain4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 51 320.1139 6.2767 20.8911 < 0.0001
Residuals 168 50.4756 0.3005


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 3.214 0.30005   5 0.13419 0.0934 2.79, 3.55 -0.42
BXD100 m 2.59 0.29069   5 0.13 0.1122 2.22, 2.98 -0.93
BXD101 m 4.7825 0.3475   4 0.17375 0.0727 4.39, 5.08 0.88
BXD16 m 4.22 0.87835   5 0.39281 0.2081 2.93, 5.05 0.41
BXD27 m 4.18 0.81539   4 0.4077 0.1951 3.57, 5.38 0.38
BXD32 m 2.65 2.1565   3 1.2451 0.8138 0.16, 3.92 -0.88
BXD34 m 3.902 0.14923   5 0.06674 0.0382 3.73, 4.03 0.15
BXD39 m 4.44 0.32879   5 0.14704 0.0741 3.95, 4.77 0.59
BXD40 m 2.9375 0.45265   4 0.22632 0.1541 2.55, 3.53 -0.64
BXD43 m 3.29 0.26851   3 0.15503 0.0816 2.98, 3.45 -0.35
BXD44 m 2.45 0.54941   5 0.2457 0.2242 1.85, 2.97 -1.05
BXD45 m 1.91 0.06976   4 0.03488 0.0365 1.84, 1.97 -1.49
BXD48 m 4.248 0.18006   5 0.08052 0.0424 3.95, 4.43 0.44
BXD48a m 5.25 0.76974   3 0.44441 0.1466 4.6, 6.1 1.26
BXD49 m 3.645 0.89616   4 0.44808 0.2459 2.85, 4.55 -0.06
BXD50 m 4.346 0.75745   5 0.33874 0.1743 3.67, 5.65 0.52
BXD51 m 1.8025 0.06292   4 0.03146 0.0349 1.71, 1.85 -1.58
BXD53 m 4.51 0.75283   5 0.33667 0.1669 3.2, 5.13 0.65
BXD55 m 2.1375 0.20614   4 0.10307 0.0964 1.91, 2.41 -1.3
BXD56 m 3.675 0.53033   2   0.375 0.1443 3.3, 4.05 -0.04
BXD6 m 3.608 0.50524   5 0.22595 0.14 2.8, 4.03 -0.09
BXD60 m 6.115 0.2144   4 0.1072 0.0351 5.84, 6.36 1.98
BXD61 m 1.366 0.78989   5 0.35325 0.5783 0.65, 2.55 -1.94
BXD62 m 5.7075 0.51526   4 0.25763 0.0903 5.03, 6.27 1.64
BXD63 m 3.305 0.37477   2   0.265 0.1134 3.04, 3.57 -0.34
BXD64 m 4.12 0.45461   4 0.2273 0.1103 3.48, 4.54 0.33
BXD65 m 5.225 0.41227   4 0.20614 0.0789 4.82, 5.72 1.24
BXD65a m 5.59 0.55154   4 0.27577 0.0987 4.92, 6.19 1.54
BXD66 m 4.8125 0.4719   4 0.23595 0.0981 4.47, 5.51 0.9
BXD67 m 4.0 0.57359   5 0.25652 0.1434 3.3, 4.76 0.23
BXD68 m 4.1975 0.50546   4 0.25273 0.1204 3.56, 4.75 0.39
BXD69 m 3.554 0.32285   5 0.14438 0.0908 3.12, 3.85 -0.14
BXD70 m 2.2933 0.04619   3 0.02667 0.0201 2.24, 2.32 -1.18
BXD71 m 3.04 0.78715   3 0.45446 0.2589 2.14, 3.6 -0.56
BXD73 m 1.485 0.34375   4 0.17188 0.2315 1.15, 1.92 -1.84
BXD73a m 1.582 0.12438   5 0.05562 0.0786 1.51, 1.8 -1.76
BXD73b m 4.184 0.3437   5 0.15371 0.0821 3.74, 4.7 0.38
BXD75 m 2.438 0.12256   5 0.05481 0.0503 2.28, 2.6 -1.06
BXD77 m 4.654 0.65797   5 0.29425 0.1414 3.79, 5.3 0.77
BXD79 m 4.208 0.65561   5 0.2932 0.1558 3.36, 4.87 0.4
BXD81 m 4.36 0.21   3 0.12124 0.0482 4.15, 4.57 0.53
BXD83 m 4.0475 0.63458   4 0.31729 0.1568 3.17, 4.6 0.27
BXD84 m 5.38 0.34044   3 0.19655 0.0633 5.08, 5.75 1.37
BXD85 m 3.74 0.3574   4 0.1787 0.0956 3.3, 4.14 0.02
BXD87 m 2.556 0.06025   5 0.02694 0.0236 2.5, 2.65 -0.96
BXD89 m 3.26 0.308   4 0.154 0.0945 3.0, 3.7 -0.38
BXD90 m 4.37 0.62145   4 0.31072 0.1422 3.9, 5.28 0.54
BXD95 m 4.9675 1.0855   4 0.54273 0.2185 3.5, 6.05 1.03
BXD98 m 5.884 0.27673   5 0.12376 0.047 5.49, 6.27 1.78
BXD99 m 4.68 0.39006   5 0.17444 0.0833 4.34, 5.26 0.79
C57BL/6J m 2.168 0.19267   5 0.08616 0.0889 1.94, 2.37 -1.28
DBA/2J m 2.318 0.32105   5 0.14358 0.1385 1.9, 2.59 -1.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 3.214 0.2451327183 3.6979373824 2.7300626176
BXD100 m 2.59 0.2451327183 3.0739373824 2.1060626176
BXD101 m 4.7825 0.2740667109 5.323558442 4.241441558
BXD16 m 4.22 0.2451327183 4.7039373824 3.7360626176
BXD27 m 4.18 0.2740667109 4.721058442 3.638941558
BXD32 m 2.65 0.3164649786 3.2747604742 2.0252395258
BXD34 m 3.902 0.2451327183 4.3859373824 3.4180626176
BXD39 m 4.44 0.2451327183 4.9239373824 3.9560626176
BXD40 m 2.9375 0.2740667109 3.478558442 2.396441558
BXD43 m 3.29 0.3164649786 3.9147604742 2.6652395258
BXD44 m 2.45 0.2451327183 2.9339373824 1.9660626176
BXD45 m 1.91 0.2740667109 2.451058442 1.368941558
BXD48 m 4.248 0.2451327183 4.7319373824 3.7640626176
BXD48a m 5.25 0.3164649786 5.8747604742 4.6252395258
BXD49 m 3.645 0.2740667109 4.186058442 3.103941558
BXD50 m 4.346 0.2451327183 4.8299373824 3.8620626176
BXD51 m 1.8025 0.2740667109 2.343558442 1.261441558
BXD53 m 4.51 0.2451327183 4.9939373824 4.0260626176
BXD55 m 2.1375 0.2740667109 2.678558442 1.596441558
BXD56 m 3.675 0.3875888595 4.4401721867 2.9098278133
BXD6 m 3.608 0.2451327183 4.0919373824 3.1240626176
BXD60 m 6.115 0.2740667109 6.656058442 5.573941558
BXD61 m 1.366 0.2451327183 1.8499373824 0.8820626176
BXD62 m 5.7075 0.2740667109 6.248558442 5.166441558
BXD63 m 3.305 0.3875888595 4.0701721867 2.5398278133
BXD64 m 4.12 0.2740667109 4.661058442 3.578941558
BXD65 m 5.225 0.2740667109 5.766058442 4.683941558
BXD65a m 5.59 0.2740667109 6.131058442 5.048941558
BXD66 m 4.8125 0.2740667109 5.353558442 4.271441558
BXD67 m 4.0 0.2451327183 4.4839373824 3.5160626176
BXD68 m 4.1975 0.2740667109 4.738558442 3.656441558
BXD69 m 3.554 0.2451327183 4.0379373824 3.0700626176
BXD70 m 2.2933333333 0.3164649786 2.9180938076 1.6685728591
BXD71 m 3.04 0.3164649786 3.6647604742 2.4152395258
BXD73 m 1.485 0.2740667109 2.026058442 0.943941558
BXD73a m 1.582 0.2451327183 2.0659373824 1.0980626176
BXD73b m 4.184 0.2451327183 4.6679373824 3.7000626176
BXD75 m 2.438 0.2451327183 2.9219373824 1.9540626176
BXD77 m 4.654 0.2451327183 5.1379373824 4.1700626176
BXD79 m 4.208 0.2451327183 4.6919373824 3.7240626176
BXD81 m 4.36 0.3164649786 4.9847604742 3.7352395258
BXD83 m 4.0475 0.2740667109 4.588558442 3.506441558
BXD84 m 5.38 0.3164649786 6.0047604742 4.7552395258
BXD85 m 3.74 0.2740667109 4.281058442 3.198941558
BXD87 m 2.556 0.2451327183 3.0399373824 2.0720626176
BXD89 m 3.26 0.2740667109 3.801058442 2.718941558
BXD90 m 4.37 0.2740667109 4.911058442 3.828941558
BXD95 m 4.9675 0.2740667109 5.508558442 4.426441558
BXD98 m 5.884 0.2451327183 6.3679373824 5.4000626176
BXD99 m 4.68 0.2451327183 5.1639373824 4.1960626176
C57BL/6J m 2.168 0.2451327183 2.6519373824 1.6840626176
DBA/2J m 2.318 0.2451327183 2.8019373824 1.8340626176




  GWAS USING LINEAR MIXED MODELS