Project measure / variable:   Auwerx1   rer_max_treadmill2_HFD

ID, description, units MPD:111339   rer_max_treadmill2_HFD   maximum respiratory exchange ratio (RER), second treadmill test (VCO2:VO2)   [ratio]  HFD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   56 strains     sex: m     age: 25wks
Procedure monitoring system
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  STRAIN COMPARISON PLOT
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Auwerx1 - maximum respiratory exchange ratio (RER), second treadmill test (VCO2:VO2) HFD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested56 strains
Mean of the strain means0.92742   ratio
Median of the strain means0.9273   ratio
SD of the strain means± 0.04353
Coefficient of variation (CV)0.0469
Min–max range of strain means0.8058   –   1.0145   ratio
Mean sample size per strain4.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 55 0.4697 0.0085 5.2132 < 0.0001
Residuals 188 0.3079 0.0016


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 0.8058 0.03067   5 0.01372 0.0381 0.763, 0.841 -2.79
BXD100 m 0.917 0.05761   5 0.02576 0.0628 0.843, 1.0 -0.24
BXD101 m 0.90475 0.03558   4 0.01779 0.0393 0.87, 0.942 -0.52
BXD11 m 0.8992 0.03176   5 0.0142 0.0353 0.872, 0.948 -0.65
BXD12 m 0.917 0.03453   5 0.01544 0.0377 0.886, 0.971 -0.24
BXD16 m 0.9112 0.01983   5 0.00886792 0.0218 0.879, 0.926 -0.37
BXD2 m 0.8998 0.02765   5 0.01237 0.0307 0.873, 0.937 -0.63
BXD27 m 0.838 0.03755   4 0.01877 0.0448 0.799, 0.886 -2.05
BXD32 m 0.901 0.01229   3 0.0070946 0.0136 0.887, 0.91 -0.61
BXD34 m 0.8284 0.03893   5 0.01741 0.047 0.778, 0.884 -2.27
BXD39 m 0.9348 0.02729   5 0.0122 0.0292 0.887, 0.954 0.17
BXD40 m 0.93 0.01997   3 0.01153 0.0215 0.908, 0.947 0.06
BXD43 m 0.91 0.016   3 0.0092376 0.0176 0.894, 0.926 -0.4
BXD44 m 0.9505 0.04337   8 0.01533 0.0456 0.895, 1.0 0.53
BXD45 m 0.9435 0.04652   4 0.02326 0.0493 0.9, 0.998 0.37
BXD48 m 0.982 0.03831   5 0.01713 0.039 0.936, 1.024 1.25
BXD48a m 0.94067 0.04373   3 0.02525 0.0465 0.912, 0.991 0.3
BXD49 m 0.961 0.03465   4 0.01733 0.0361 0.936, 1.01 0.77
BXD50 m 0.8616 0.04043   5 0.01808 0.0469 0.815, 0.904 -1.51
BXD51 m 0.92425 0.03882   4 0.01941 0.042 0.901, 0.982 -0.07
BXD53 m 0.8932 0.03303   5 0.01477 0.037 0.839, 0.927 -0.79
BXD55 m 0.89625 0.03931   4 0.01965 0.0439 0.855, 0.939 -0.72
BXD56 m 0.9015 0.04455   2   0.0315 0.0494 0.87, 0.933 -0.6
BXD6 m 0.8882 0.01622   5 0.00725534 0.0183 0.866, 0.91 -0.9
BXD60 m 0.8996 0.03279   5 0.01466 0.0365 0.862, 0.942 -0.64
BXD61 m 0.9554 0.01716   5 0.00767203 0.018 0.933, 0.974 0.64
BXD62 m 0.9505 0.03851   4 0.01925 0.0405 0.9, 0.993 0.53
BXD63 m 0.912 0.00707107   2   0.005 0.0078 0.907, 0.917 -0.35
BXD64 m 0.921 0.02944   4 0.01472 0.032 0.885, 0.957 -0.15
BXD65 m 0.9695 0.01515   4 0.00757738 0.0156 0.952, 0.989 0.97
BXD65a m 1.0025 0.02986   4 0.01493 0.0298 0.96, 1.03 1.72
BXD66 m 1.0048 0.08664   5 0.03874 0.0862 0.876, 1.119 1.78
BXD67 m 0.8904 0.06981   5 0.03122 0.0784 0.789, 0.971 -0.85
BXD68 m 0.90452 0.06478   4 0.03239 0.0716 0.839, 0.9911 -0.53
BXD69 m 0.9096 0.02456   5 0.01098 0.027 0.89, 0.95 -0.41
BXD70 m 0.9705 0.03706   4 0.01853 0.0382 0.942, 1.023 0.99
BXD71 m 0.97 0.09116   3 0.05263 0.094 0.911, 1.075 0.98
BXD73 m 1.0145 0.04811   4 0.02406 0.0474 0.954, 1.071 2.0
BXD73a m 0.98725 0.01087   4 0.00543714 0.011 0.971, 0.994 1.37
BXD73b m 0.9464 0.0307   5 0.01373 0.0324 0.918, 0.99 0.44
BXD75 m 0.9342 0.02517   5 0.01126 0.0269 0.905, 0.973 0.16
BXD77 m 0.8934 0.02778   5 0.01242 0.0311 0.875, 0.942 -0.78
BXD79 m 0.906 0.02037   5 0.00911043 0.0225 0.883, 0.929 -0.49
BXD8 m 0.8532 0.04713   5 0.02108 0.0552 0.806, 0.923 -1.7
BXD81 m 0.9475 0.08034   4 0.04017 0.0848 0.848, 1.019 0.46
BXD83 m 0.96675 0.02694   4 0.01347 0.0279 0.95, 1.007 0.9
BXD84 m 0.94667 0.03859   3 0.02228 0.0408 0.916, 0.99 0.44
BXD85 m 0.98525 0.04247   4 0.02123 0.0431 0.934, 1.038 1.33
BXD87 m 0.95125 0.01694   4 0.00846931 0.0178 0.935, 0.97 0.55
BXD89 m 0.9695 0.01838   4 0.00918785 0.019 0.953, 0.995 0.97
BXD90 m 0.96875 0.02285   4 0.01143 0.0236 0.948, 0.99 0.95
BXD95 m 0.9456 0.06579   5 0.02942 0.0696 0.845, 1.026 0.42
BXD98 m 0.882 0.02278   5 0.01019 0.0258 0.863, 0.917 -1.04
BXD99 m 0.9246 0.03887   5 0.01738 0.042 0.888, 0.99 -0.06
C57BL/6J m 0.964 0.02311   4 0.01155 0.024 0.933, 0.988 0.84
DBA/2J m 0.9486 0.05893   5 0.02636 0.0621 0.884, 1.031 0.49


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 0.8058 0.0180996456 0.8415044956 0.7700955044
BXD100 m 0.917 0.0180996456 0.9527044956 0.8812955044
BXD101 m 0.90475 0.020236019 0.9446688397 0.8648311603
BXD11 m 0.8992 0.0180996456 0.9349044956 0.8634955044
BXD12 m 0.917 0.0180996456 0.9527044956 0.8812955044
BXD16 m 0.9112 0.0180996456 0.9469044956 0.8754955044
BXD2 m 0.8998 0.0180996456 0.9355044956 0.8640955044
BXD27 m 0.838 0.020236019 0.8779188397 0.7980811603
BXD32 m 0.901 0.023366542 0.9470943057 0.8549056943
BXD34 m 0.8284 0.0180996456 0.8641044956 0.7926955044
BXD39 m 0.9348 0.0180996456 0.9705044956 0.8990955044
BXD40 m 0.93 0.023366542 0.9760943057 0.8839056943
BXD43 m 0.91 0.023366542 0.9560943057 0.8639056943
BXD44 m 0.9505 0.0143090262 0.9787268822 0.9222731178
BXD45 m 0.9435 0.020236019 0.9834188397 0.9035811603
BXD48 m 0.982 0.0180996456 1.0177044956 0.9462955044
BXD48a m 0.9406666667 0.023366542 0.9867609723 0.894572361
BXD49 m 0.961 0.020236019 1.0009188397 0.9210811603
BXD50 m 0.8616 0.0180996456 0.8973044956 0.8258955044
BXD51 m 0.92425 0.020236019 0.9641688397 0.8843311603
BXD53 m 0.8932 0.0180996456 0.9289044956 0.8574955044
BXD55 m 0.89625 0.020236019 0.9361688397 0.8563311603
BXD56 m 0.9015 0.0286180525 0.9579537645 0.8450462355
BXD6 m 0.8882 0.0180996456 0.9239044956 0.8524955044
BXD60 m 0.8996 0.0180996456 0.9353044956 0.8638955044
BXD61 m 0.9554 0.0180996456 0.9911044956 0.9196955044
BXD62 m 0.9505 0.020236019 0.9904188397 0.9105811603
BXD63 m 0.912 0.0286180525 0.9684537645 0.8555462355
BXD64 m 0.921 0.020236019 0.9609188397 0.8810811603
BXD65 m 0.9695 0.020236019 1.0094188397 0.9295811603
BXD65a m 1.0025 0.020236019 1.0424188397 0.9625811603
BXD66 m 1.0048 0.0180996456 1.0405044956 0.9690955044
BXD67 m 0.8904 0.0180996456 0.9261044956 0.8546955044
BXD68 m 0.904525 0.020236019 0.9444438397 0.8646061603
BXD69 m 0.9096 0.0180996456 0.9453044956 0.8738955044
BXD70 m 0.9705 0.020236019 1.0104188397 0.9305811603
BXD71 m 0.97 0.023366542 1.0160943057 0.9239056943
BXD73 m 1.0145 0.020236019 1.0544188397 0.9745811603
BXD73a m 0.98725 0.020236019 1.0271688397 0.9473311603
BXD73b m 0.9464 0.0180996456 0.9821044956 0.9106955044
BXD75 m 0.9342 0.0180996456 0.9699044956 0.8984955044
BXD77 m 0.8934 0.0180996456 0.9291044956 0.8576955044
BXD79 m 0.906 0.0180996456 0.9417044956 0.8702955044
BXD8 m 0.8532 0.0180996456 0.8889044956 0.8174955044
BXD81 m 0.9475 0.020236019 0.9874188397 0.9075811603
BXD83 m 0.96675 0.020236019 1.0066688397 0.9268311603
BXD84 m 0.9466666667 0.023366542 0.9927609723 0.900572361
BXD85 m 0.98525 0.020236019 1.0251688397 0.9453311603
BXD87 m 0.95125 0.020236019 0.9911688397 0.9113311603
BXD89 m 0.9695 0.020236019 1.0094188397 0.9295811603
BXD90 m 0.96875 0.020236019 1.0086688397 0.9288311603
BXD95 m 0.9456 0.0180996456 0.9813044956 0.9098955044
BXD98 m 0.882 0.0180996456 0.9177044956 0.8462955044
BXD99 m 0.9246 0.0180996456 0.9603044956 0.8888955044
C57BL/6J m 0.964 0.020236019 1.0039188397 0.9240811603
DBA/2J m 0.9486 0.0180996456 0.9843044956 0.9128955044




  GWAS USING LINEAR MIXED MODELS