Project measure / variable:   Auwerx1   vert_act_CD

ID, description, units MPD:111306   vert_act_CD   vertical activity (beam breaks) at night, basal activity test, for 48h   [n/h]  CD  
high-fat diet study
Data set, strains Auwerx1   BXD w/par   57 strains     sex: m     age: 23wks
Procedure monitoring system
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  STRAIN COMPARISON PLOT
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Auwerx1 - vertical activity (beam breaks) at night, basal activity test, for 48h CD



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested57 strains
Mean of the strain means672.1   n/h
Median of the strain means578.8   n/h
SD of the strain means± 252.8
Coefficient of variation (CV)0.3762
Min–max range of strain means344.4   –   1335.0   n/h
Mean sample size per strain4.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 56 13559851.1327 242140.1988 5.9567 < 0.0001
Residuals 177 7195104.6086 40650.3085


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 m 515.6 163.9   5 73.3 0.3179 304.0, 644.0 -0.62
BXD100 m 759.3 128.9   3 74.42 0.1697 625.0, 882.0 0.34
BXD101 m 1335.0 77.78   2   55.0 0.0583 1280.0, 1390.0 2.62
BXD11 m 503.0 35.355   2   25.0 0.0703 478.0, 528.0 -0.67
BXD12 m 578.8 120.9   4 60.43 0.2088 410.0, 680.0 -0.37
BXD16 m 743.5 259.0   4 129.5 0.3484 472.0, 1096.0 0.28
BXD2 m 598.3 439.0   3 253.4 0.7336 333.0, 1105.0 -0.29
BXD27 m 671.8 253.8   5 113.5 0.3778 452.0, 988.0 0.0
BXD32 m 897.4 185.7   5 83.06 0.207 633.0, 1060.0 0.89
BXD34 m 838.3 192.2   3 110.9 0.2292 719.0, 1060.0 0.66
BXD39 m 469.5 106.8   4 53.41 0.2275 354.0, 587.0 -0.8
BXD40 m 904.7 272.2   3 157.2 0.3009 591.0, 1079.0 0.92
BXD43 m 968.7 75.08   3 43.345 0.0775 883.0, 1023.0 1.17
BXD44 m 507.9 213.4   9 71.12 0.4201 225.0, 897.0 -0.65
BXD45 m 1233.0 496.9   4 248.5 0.403 671.0, 1834.0 2.22
BXD48 m 607.8 147.0   5 65.73 0.2418 453.0, 795.0 -0.25
BXD48a m 765.5 302.0   4 151.0 0.3946 354.0, 1034.0 0.37
BXD49 m 779.2 263.8   4 131.9 0.3385 483.0, 1125.0 0.42
BXD50 m 573.5 50.74   4 25.369 0.0885 501.0, 619.0 -0.39
BXD51 m 625.8 102.5   4 51.23 0.1637 483.0, 720.0 -0.18
BXD53 m 564.0 89.27   5 39.925 0.1583 421.0, 657.0 -0.43
BXD55 m 865.3 75.11   5 33.591 0.0868 813.6, 990.3 0.76
BXD56 m 356.7 262.2   3 151.4 0.7351 58.0, 549.0 -1.25
BXD6 m 406.7 103.0   3 59.48 0.2533 337.0, 525.0 -1.05
BXD60 m 492.6 81.11   5 36.275 0.1647 385.9, 593.1 -0.71
BXD61 m 705.7 158.3   3 91.37 0.2243 582.8, 884.3 0.13
BXD62 m 466.5 70.47   4 35.237 0.1511 371.1, 537.6 -0.81
BXD63 m 543.3 135.0   4 67.52 0.2486 368.6, 650.6 -0.51
BXD64 m 435.1 105.2   4 52.58 0.2417 329.8, 553.0 -0.94
BXD65 m 541.4 37.705   4 18.852 0.0696 488.2, 572.3 -0.52
BXD65a m 541.0 67.46   4 33.729 0.1247 460.0, 606.0 -0.52
BXD65b m 681.0 134.5   4 67.26 0.1975 522.4, 796.9 0.04
BXD66 m 368.4 106.6   5 47.691 0.2895 277.3, 550.2 -1.2
BXD67 m 507.0 185.4   5 82.93 0.3658 273.0, 791.0 -0.65
BXD68 m 898.0 434.2   2   307.0 0.4835 591.0, 1205.0 0.89
BXD69 m 872.2 152.2   5 68.05 0.1745 623.0, 1004.0 0.79
BXD70 m 461.7 190.5   4 95.25 0.4126 270.6, 707.3 -0.83
BXD71 m 1052.0 442.8   5 198.0 0.4208 786.5, 1836.0 1.5
BXD73 m 750.4 184.5   4 92.23 0.2458 493.8, 910.2 0.31
BXD73a m 574.6 173.3   5 77.49 0.3015 416.8, 820.2 -0.39
BXD73b m 486.2 118.6   4 59.28 0.2438 329.0, 594.0 -0.74
BXD75 m 400.4 103.7   5 46.367 0.259 294.5, 568.8 -1.07
BXD77 m 402.8 79.47   5 35.538 0.1973 295.0, 491.0 -1.07
BXD79 m 378.2 99.59   5 44.539 0.2633 262.0, 529.0 -1.16
BXD8 m 554.5 204.9   4 102.4 0.3695 338.0, 796.0 -0.47
BXD81 m 374.4 163.1   4 81.56 0.4357 229.3, 606.3 -1.18
BXD83 m 344.4 66.66   3 38.488 0.1935 273.7, 406.1 -1.3
BXD84 m 1197.0 444.7   4 222.3 0.3714 762.0, 1818.0 2.08
BXD85 m 1033.0 49.248   5 22.024 0.0477 951.9, 1081.0 1.43
BXD87 m 555.5 94.32   4 47.16 0.1698 447.6, 655.1 -0.46
BXD89 m 673.2 100.1   4 50.07 0.1488 564.3, 802.1 0.0
BXD90 m 466.5 70.47   4 35.237 0.1511 371.1, 537.6 -0.81
BXD95 m 695.2 211.3   4 105.6 0.3039 384.4, 835.7 0.09
BXD98 m 551.8 256.7   4 128.4 0.4653 344.0, 905.0 -0.48
BXD99 m 1142.0 334.2   5 149.4 0.2927 781.3, 1473.0 1.86
C57BL/6J m 774.3 92.79   4 46.393 0.1198 703.0, 905.0 0.4
DBA/2J m 1320.0 276.5   3 159.6 0.2094 1090.0, 1627.0 2.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 m 515.6 90.1668548003 693.5404289508 337.6595710492
BXD100 m 759.3333333333 116.4049090072 989.0534393144 529.6132273522
BXD101 m 1335.0 142.5663153114 1616.3485216559 1053.6514783441
BXD11 m 503.0 142.5663153114 784.3485216559 221.6514783441
BXD12 m 578.75 100.8096083254 777.6934475397 379.8065524603
BXD16 m 743.5 100.8096083254 942.4434475397 544.5565524603
BXD2 m 598.3333333333 116.4049090072 828.0534393144 368.6132273522
BXD27 m 671.8 90.1668548003 849.7404289508 493.8595710492
BXD32 m 897.4 90.1668548003 1075.3404289508 719.4595710492
BXD34 m 838.3333333333 116.4049090072 1068.0534393144 608.6132273522
BXD39 m 469.5 100.8096083254 668.4434475397 270.5565524603
BXD40 m 904.6666666667 116.4049090072 1134.3867726478 674.9465606856
BXD43 m 968.6666666667 116.4049090072 1198.3867726478 738.9465606856
BXD44 m 507.8888888889 67.2064055503 640.5178539153 375.2599238624
BXD45 m 1233.0 100.8096083254 1431.9434475397 1034.0565524603
BXD48 m 607.8 90.1668548003 785.7404289508 429.8595710492
BXD48a m 765.5 100.8096083254 964.4434475397 566.5565524603
BXD49 m 779.25 100.8096083254 978.1934475397 580.3065524603
BXD50 m 573.5 100.8096083254 772.4434475397 374.5565524603
BXD51 m 625.75 100.8096083254 824.6934475397 426.8065524603
BXD53 m 564.0 90.1668548003 741.9404289508 386.0595710492
BXD55 m 865.34 90.1668548003 1043.2804289508 687.3995710492
BXD56 m 356.6666666667 116.4049090072 586.3867726478 126.9465606856
BXD6 m 406.6666666667 116.4049090072 636.3867726478 176.9465606856
BXD60 m 492.64 90.1668548003 670.5804289508 314.6995710492
BXD61 m 705.7333333333 116.4049090072 935.4534393144 476.0132273522
BXD62 m 466.45 100.8096083254 665.3934475397 267.5065524603
BXD63 m 543.275 100.8096083254 742.2184475397 344.3315524603
BXD64 m 435.15 100.8096083254 634.0934475397 236.2065524603
BXD65 m 541.425 100.8096083254 740.3684475397 342.4815524603
BXD65a m 541.0 100.8096083254 739.9434475397 342.0565524603
BXD65b m 680.975 100.8096083254 879.9184475397 482.0315524603
BXD66 m 368.4 90.1668548003 546.3404289508 190.4595710492
BXD67 m 507.0 90.1668548003 684.9404289508 329.0595710492
BXD68 m 898.0 142.5663153114 1179.3485216559 616.6514783441
BXD69 m 872.16 90.1668548003 1050.1004289508 694.2195710492
BXD70 m 461.7 100.8096083254 660.6434475397 262.7565524603
BXD71 m 1052.42 90.1668548003 1230.3604289508 874.4795710492
BXD73 m 750.425 100.8096083254 949.3684475397 551.4815524603
BXD73a m 574.64 90.1668548003 752.5804289508 396.6995710492
BXD73b m 486.25 100.8096083254 685.1934475397 287.3065524603
BXD75 m 400.36 90.1668548003 578.3004289508 222.4195710492
BXD77 m 402.8 90.1668548003 580.7404289508 224.8595710492
BXD79 m 378.2 90.1668548003 556.1404289508 200.2595710492
BXD8 m 554.5 100.8096083254 753.4434475397 355.5565524603
BXD81 m 374.425 100.8096083254 573.3684475397 175.4815524603
BXD83 m 344.4333333333 116.4049090072 574.1534393144 114.7132273522
BXD84 m 1197.25 100.8096083254 1396.1934475397 998.3065524603
BXD85 m 1032.58 90.1668548003 1210.5204289508 854.6395710492
BXD87 m 555.55 100.8096083254 754.4934475397 356.6065524603
BXD89 m 673.175 100.8096083254 872.1184475397 474.2315524603
BXD90 m 466.45 100.8096083254 665.3934475397 267.5065524603
BXD95 m 695.2 100.8096083254 894.1434475397 496.2565524603
BXD98 m 551.75 100.8096083254 750.6934475397 352.8065524603
BXD99 m 1141.66 90.1668548003 1319.6004289508 963.7195710492
C57BL/6J m 774.3 100.8096083254 973.2434475397 575.3565524603
DBA/2J m 1320.3333333333 116.4049090072 1550.0534393144 1090.6132273522




  GWAS USING LINEAR MIXED MODELS