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Project measure / variable:   CSNA03   antici_incorrect_in_acq_JAX

ID, description, units MPD:110485   antici_incorrect_in_acq_JAX   mean number of anticipatory nose pokes made in incorrect flanking hole without prior successful nose poke in central hole (reversal learning assay), founders   [n]  acquisition  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - mean number of anticipatory nose pokes made in incorrect flanking hole without prior successful nose poke in central hole (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means0.60856   n 2.4187   n
Median of the strain means0.46956   n 0.48291   n
SD of the strain means± 0.33693 ± 5.3601
Coefficient of variation (CV)0.5537 2.2161
Min–max range of strain means0.35303   –   1.3457   n 0.14975   –   15.669   n
Mean sample size per strain7.4   mice 6.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 112.6629 112.6629 1.0512 0.3079
strain 7 626.3432 89.4776 0.8349 0.5612
sex:strain 7 768.233 109.7476 1.024 0.4199
Residuals 92 9860.3007 107.1772


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.35303 0.35655   3 0.20586 1.01 0.14286, 0.76471 -0.76
129S1/SvImJ m 0.66309 0.48934   2   0.34602 0.738 0.31707, 1.0091 -0.33
A/J f 1.3457 0.71148   6 0.29046 0.5287 0.15, 2.2133 2.19
A/J m 1.0536 0.51383   5 0.22979 0.4877 0.46154, 1.795 -0.25
C57BL/6J f 0.43861 0.3241   14 0.08662 0.7389 0.05, 0.93056 -0.5
C57BL/6J m 0.14975 0.07677   10 0.02428 0.5127 0.03448, 0.27711 -0.42
CAST/EiJ f 0.40796 0.3267   10 0.10331 0.8008 0.12088, 0.99213 -0.6
CAST/EiJ m 0.49649 0.32969   7 0.12461 0.664 0.08163, 0.9816 -0.36
NOD/ShiLtJ f 0.82857 0.99338   7 0.37546 1.1989 0.04651, 2.9 0.65
NOD/ShiLtJ m 0.43815 0.37372   10 0.11818 0.8529 0.05, 1.1216 -0.37
NZO/HlLtJ f 0.50051 0.62053   3 0.35826 1.2398 0.05, 1.2083 -0.32
NZO/HlLtJ m 0.41057 0.03424   2   0.02421 0.0834 0.38636, 0.43478 -0.37
PWK/PhJ f 0.3707 0.42188   8 0.14916 1.1381 0.03571, 1.3366 -0.71
PWK/PhJ m 15.669 40.495   7 15.306 2.5844 0.11765, 107.5 2.47
WSB/EiJ f 0.62342 0.65528   8 0.23168 1.0511 0.07576, 2.1438 0.04
WSB/EiJ m 0.46934 0.63367   6 0.2587 1.3501 0.05, 1.7313 -0.36


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.35303 5.9771002231 12.2240669682 -11.5180069682
129S1/SvImJ m 0.663085 7.3204228441 15.2020766449 -13.8759066449
A/J f 1.3457166667 4.2264480996 9.7398074066 -7.0483740733
A/J m 1.05361 4.6298419246 10.248875696 -8.141655696
C57BL/6J f 0.4386092857 2.7668597625 5.9338316009 -5.0566130294
C57BL/6J m 0.149746 3.2737926207 6.6517807285 -6.3522887285
CAST/EiJ f 0.407963 3.2737926207 6.9099977285 -6.0940717285
CAST/EiJ m 0.4964928571 3.9129306013 8.2679107835 -7.2749250692
NOD/ShiLtJ f 0.8285714286 3.9129306013 8.5999893549 -6.9428464978
NOD/ShiLtJ m 0.438147 3.2737926207 6.9401817285 -6.0638877285
NZO/HlLtJ f 0.5005133333 5.9771002231 12.3715503015 -11.3705236349
NZO/HlLtJ m 0.41057 7.3204228441 14.9495616449 -14.1284216449
PWK/PhJ f 0.37069625 3.660211422 7.6401920724 -6.8987995724
PWK/PhJ m 15.6687885714 3.9129306013 23.4402064978 7.8973706451
WSB/EiJ f 0.62342375 3.660211422 7.8929195724 -6.6460720724
WSB/EiJ m 0.469345 4.2264480996 8.8634357399 -7.9247457399


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.5080575 4.725312627 9.8929362519 -8.8768212519
A/J both 1.1996633333 3.1344178002 7.4248876379 -5.0255609713
C57BL/6J both 0.2941776429 2.1432003563 4.5507585449 -3.9624032592
CAST/EiJ both 0.4522279286 2.5509186587 5.5185725723 -4.6141167152
NOD/ShiLtJ both 0.6333592143 2.5509186587 5.699703858 -4.4329854294
NZO/HlLtJ both 0.4555416667 4.725312627 9.8404204186 -8.9293370852
PWK/PhJ both 8.0197424107 2.6790004453 13.3404685383 2.6990162831
WSB/EiJ both 0.546384375 2.7955326502 6.0985535201 -5.0057847701




  GWAS USING LINEAR MIXED MODELS