Project measure / variable:   CSNA03   retrieval_in_rev_JAX

ID, description, units MPD:110476   retrieval_in_rev_JAX   retrieval (reversal learning assay), founders    reversal   informational
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - retrieval (reversal learning assay), founders reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means11598.0   None 12656.0   None
Median of the strain means13338.0   None 11790.0   None
SD of the strain means± 5246.0 ± 5514.0
Coefficient of variation (CV)0.4523 0.4357
Min–max range of strain means4468.0   –   16844.0   None 5948.0   –   20652.0   None
Mean sample size per strain7.6   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 17340792.2683 17340792.2683 0.1822 0.6704
strain 7 2319066292.8862 331295184.698 3.4816 0.0022
sex:strain 7 114020446.3935 16288635.1991 0.1712 0.9904
Residuals 100 9515554654.659 95155546.5466


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4468.0 1985.0   3 1146.0 0.4441 2843.0, 6680.0 -1.36
129S1/SvImJ m 6477.0 2000.0   4 999.9 0.3087 3716.0, 8041.0 -1.12
A/J f 15031.0 5630.0   6 2299.0 0.3746 9352.0, 24229.0 0.65
A/J m 13091.0 6242.0   5 2792.0 0.4768 7201.0, 20944.0 0.08
C57BL/6J f 15932.0 14334.0   14 3831.0 0.8997 6310.0, 63226.0 0.83
C57BL/6J m 16762.0 14006.0   11 4223.0 0.8356 3012.0, 48311.0 0.74
CAST/EiJ f 16539.0 6802.0   10 2151.0 0.4113 5147.0, 25185.0 0.94
CAST/EiJ m 20652.0 12225.0   8 4322.0 0.5919 6219.0, 42316.0 1.45
NOD/ShiLtJ f 5854.0 3094.0   8 1094.0 0.5286 3070.0, 12693.0 -1.09
NOD/ShiLtJ m 9398.0 7180.0   11 2165.0 0.764 2931.0, 28680.0 -0.59
NZO/HlLtJ f 6468.0 763.3   3 440.7 0.118 5643.0, 7149.0 -0.98
NZO/HlLtJ m 5948.0 876.8   2   620.0 0.1474 5328.0, 6568.0 -1.22
PWK/PhJ f 16844.0 12361.0   9 4120.0 0.7338 8827.0, 49213.0 1.0
PWK/PhJ m 18430.0 12597.0   8 4454.0 0.6835 7164.0, 39678.0 1.05
WSB/EiJ f 11645.0 3355.0   8 1186.0 0.2881 6332.0, 17327.0 0.01
WSB/EiJ m 10490.0 4234.0   6 1729.0 0.4036 2980.0, 15817.0 -0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4468.3333333333 5631.9193456166 15641.9009096584 -6705.2342429917
129S1/SvImJ m 6477.25 4877.385225369 16153.8433719996 -3199.3433719996
A/J f 15030.6666666667 3982.3683603812 22931.5720699322 7129.7612634011
A/J m 13091.0 4362.4659665513 21746.008228166 4435.991771834
C57BL/6J f 15931.8571428571 2607.0720652348 21104.2138670214 10759.5004186928
C57BL/6J m 16761.5454545454 2941.1739546494 22596.7508115932 10926.3400974977
CAST/EiJ f 16539.3 3084.7292676439 22659.3150093615 10419.2849906385
CAST/EiJ m 20652.375 3448.8321673175 27494.7597921257 13809.9902078743
NOD/ShiLtJ f 5853.625 3448.8321673175 12696.0097921257 -988.7597921257
NOD/ShiLtJ m 9398.0909090909 2941.1739546494 15233.2962661387 3562.8855520432
NZO/HlLtJ f 6468.0 5631.9193456165 17641.567576325 -4705.5675763251
NZO/HlLtJ m 5948.0 6897.664334635 19632.7695842515 -7736.7695842515
PWK/PhJ f 16844.0 3251.590150246 23295.0622479997 10392.9377520003
PWK/PhJ m 18430.375 3448.8321673175 25272.7597921257 11587.9902078743
WSB/EiJ f 11645.0 3448.8321673175 18487.3847921257 4802.6152078743
WSB/EiJ m 10490.1666666667 3982.3683603812 18391.0720699322 2589.2612634011


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5472.7916666667 3725.1644981188 12863.4119327494 -1917.828599416
A/J both 14060.8333333334 2953.4034209316 19920.3016031718 8201.3650634949
C57BL/6J both 16346.7012987013 1965.1545095002 20245.5118750478 12447.8907223548
CAST/EiJ both 18595.8375 2313.5469507329 23185.8487570212 14005.8262429788
NOD/ShiLtJ both 7625.8579545455 2266.3267389011 12122.1856561936 3129.5302528974
NZO/HlLtJ both 6208.0 4452.4231826283 15041.4807827486 -2625.4807827486
PWK/PhJ both 17637.1875 2369.9832184796 22339.1667048424 12935.2082951576
WSB/EiJ both 11067.5833333333 2634.0890776552 16293.5410406551 5841.6256260115




  GWAS USING LINEAR MIXED MODELS