Project measure / variable:   CSNA03   pct_correct_in_rev_JAX

ID, description, units MPD:110466   pct_correct_in_rev_JAX   percentage of responses that are correct (reversal learning assay), founders   [%]  reversal  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of responses that are correct (reversal learning assay), founders reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means46.733   % 50.14   %
Median of the strain means45.938   % 51.55   %
SD of the strain means± 3.2078 ± 4.8121
Coefficient of variation (CV)0.0686 0.096
Min–max range of strain means43.005   –   51.72   % 40.338   –   54.02   %
Mean sample size per strain7.6   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 441.2513 441.2513 3.3607 0.0697
strain 7 1381.4692 197.3527 1.5031 0.1748
sex:strain 7 585.9893 83.7128 0.6376 0.7238
Residuals 100 13129.8407 131.2984


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 51.72 18.073   3 10.434 0.3495 36.975, 71.88 1.55
129S1/SvImJ m 52.17 28.449   4 14.225 0.5453 27.477, 86.67 0.42
A/J f 46.571 6.6536   6 2.7163 0.1429 38.636, 56.38 -0.05
A/J m 45.635 5.1619   5 2.3085 0.1131 38.384, 50.0 -0.94
C57BL/6J f 43.005 8.4368   14 2.2548 0.1962 29.439, 58.54 -1.16
C57BL/6J m 40.338 10.587   11 3.1922 0.2625 16.176, 53.85 -2.04
CAST/EiJ f 49.582 6.6257   10 2.0952 0.1336 38.144, 61.49 0.89
CAST/EiJ m 54.02 15.049   8 5.3206 0.2786 28.859, 75.0 0.81
NOD/ShiLtJ f 45.306 7.5042   8 2.6531 0.1656 38.095, 61.54 -0.44
NOD/ShiLtJ m 53.62 12.459   11 3.7567 0.2323 34.703, 80.0 0.72
NZO/HlLtJ f 49.554 2.0556   3 1.1868 0.0415 47.312, 51.35 0.88
NZO/HlLtJ m 50.92 1.3081   2   0.925 0.0257 50.0, 51.85 0.16
PWK/PhJ f 43.404 11.724   9 3.9079 0.2701 21.875, 55.74 -1.04
PWK/PhJ m 50.6 11.055   8 3.9086 0.2185 39.423, 69.16 0.1
WSB/EiJ f 44.722 10.124   8 3.5793 0.2264 23.158, 55.75 -0.63
WSB/EiJ m 53.83 14.592   6 5.9573 0.2711 29.448, 69.49 0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 51.717 6.6155978988 64.8421578092 38.5918421908
129S1/SvImJ m 52.1675 5.7292758416 63.5342200914 40.8007799086
A/J f 46.5708333333 4.6779341358 55.8517214244 37.2899452423
A/J m 45.635 5.1244200974 55.8017035223 35.4682964777
C57BL/6J f 43.0053571429 3.0624267534 49.0811245991 36.9295896866
C57BL/6J m 40.3383636364 3.4548833249 47.1927537528 33.4839735199
CAST/EiJ f 49.5819 3.6235122005 56.7708450029 42.3929549971
CAST/EiJ m 54.017 4.0512097989 62.0544848565 45.9795151435
NOD/ShiLtJ f 45.306125 4.0512097989 53.3436098565 37.2686401435
NOD/ShiLtJ m 53.6244545455 3.4548833249 60.4788446619 46.770064429
NZO/HlLtJ f 49.554 6.6155978988 62.6791578092 36.4288421908
NZO/HlLtJ m 50.925 8.1024195977 66.999969713 34.850030287
PWK/PhJ f 43.4035555556 3.8195172277 50.9813689499 35.8257421613
PWK/PhJ m 50.59825 4.0512097989 58.6357348565 42.5607651435
WSB/EiJ f 44.721875 4.0512097989 52.7593598565 36.6843901435
WSB/EiJ m 53.8308333333 4.6779341358 63.1117214244 44.5499452423


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 51.94225 4.3758067035 60.6237258704 43.2607741296
A/J both 46.1029166667 3.4692488061 52.9858074886 39.2200258447
C57BL/6J both 41.6718603896 2.3083910202 46.2516424273 37.0920783519
CAST/EiJ both 51.79945 2.7176341504 57.1911587522 46.4077412478
NOD/ShiLtJ both 49.4652897727 2.6621663933 54.7469520747 44.1836274708
NZO/HlLtJ both 50.2395 5.230089361 60.6158483316 39.8631516684
PWK/PhJ both 47.0009027778 2.783927652 52.5241359491 41.4776696065
WSB/EiJ both 49.2763541667 3.0941625932 55.4150846253 43.137623708




  GWAS USING LINEAR MIXED MODELS