Project measure / variable:   CSNA03   correct_in_acq_JAX

ID, description, units MPD:110461   correct_in_acq_JAX   total number of correct responses (successful response in central nose poke hole with subsequent response in correct flanking hole) (reversal learning assay), founders   [n]  acquisition  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - total number of correct responses (successful response in central nose poke hole with subsequent response in correct flanking hole) (reversal learning assay), founders acquisition



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means48.443   n 41.822   n
Median of the strain means52.16   n 41.864   n
SD of the strain means± 14.528 ± 13.049
Coefficient of variation (CV)0.2999 0.312
Min–max range of strain means23.0   –   66.5   n 23.0   –   64.8   n
Mean sample size per strain7.6   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1386.8283 1386.8283 2.0037 0.16
strain 7 10661.8392 1523.1199 2.2006 0.0404
sex:strain 7 3259.7654 465.6808 0.6728 0.6946
Residuals 100 69214.8085 692.1481


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 52.67 47.269   3 27.291 0.8975 21.0, 107.0 0.29
129S1/SvImJ m 33.25 21.808   4 10.904 0.6559 18.0, 65.0 -0.66
A/J f 60.67 21.059   6 8.5972 0.3471 19.0, 75.0 0.84
A/J m 64.8 21.776   5 9.7386 0.3361 48.0, 95.0 1.76
C57BL/6J f 51.64 22.242   14 5.9444 0.4307 16.0, 90.0 0.22
C57BL/6J m 43.182 19.276   11 5.8119 0.4464 18.0, 72.0 0.1
CAST/EiJ f 66.5 33.334   10 10.541 0.5013 18.0, 135.0 1.24
CAST/EiJ m 53.38 28.555   8 10.096 0.535 18.0, 107.0 0.89
NOD/ShiLtJ f 36.625 17.41   8 6.1555 0.4754 19.0, 63.0 -0.81
NOD/ShiLtJ m 40.545 30.546   11 9.21 0.7534 16.0, 111.0 -0.1
NZO/HlLtJ f 23.0 5.5678   3 3.2146 0.2421 17.0, 28.0 -1.75
NZO/HlLtJ m 23.0 7.0711   2   5.0 0.3074 18.0, 28.0 -1.44
PWK/PhJ f 38.556 31.914   9 10.638 0.8278 16.0, 114.0 -0.68
PWK/PhJ m 44.25 36.586   8 12.935 0.8268 16.0, 120.0 0.19
WSB/EiJ f 57.88 20.336   8 7.1899 0.3514 41.0, 100.0 0.65
WSB/EiJ m 32.167 16.57   6 6.7647 0.5151 17.0, 60.0 -0.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 52.6666666667 15.1893392963 82.8018832158 22.5314501176
129S1/SvImJ m 33.25 13.1543536973 59.3478630801 7.1521369199
A/J f 60.6666666667 10.7404848182 81.9754826411 39.3578506923
A/J m 64.8 11.7656116269 88.1426383658 41.4573616342
C57BL/6J f 51.6428571429 7.0312978114 65.5927517389 37.6929625468
C57BL/6J m 43.1818181818 7.9323737407 58.9194217576 27.4442146061
CAST/EiJ f 66.5 8.3195437662 83.0057378792 49.9942621208
CAST/EiJ m 53.375 9.3015327015 71.8289759584 34.9210240416
NOD/ShiLtJ f 36.625 9.3015327015 55.0789759584 18.1710240416
NOD/ShiLtJ m 40.5454545455 7.9323737407 56.2830581212 24.8078509697
NZO/HlLtJ f 23.0 15.1893392963 53.1352165491 -7.1352165491
NZO/HlLtJ m 23.0 18.603065403 59.9079519168 -13.9079519168
PWK/PhJ f 38.5555555556 8.7695691315 55.9541309423 21.1569801688
PWK/PhJ m 44.25 9.3015327015 62.7039759584 25.7960240416
WSB/EiJ f 57.875 9.3015327015 76.3289759584 39.4210240416
WSB/EiJ m 32.1666666667 10.7404848182 53.4754826411 10.8578506923


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 42.9583333333 10.0468035894 62.8909055068 23.0257611598
A/J both 62.7333333333 7.9653567259 78.5363742124 46.9302924542
C57BL/6J both 47.4123376623 5.3000401431 57.9274663533 36.8972089714
CAST/EiJ both 59.9375 6.2396578246 72.3168034094 47.5581965906
NOD/ShiLtJ both 38.5852272727 6.1123044705 50.7118652547 26.4585892908
NZO/HlLtJ both 23.0 12.0082270824 46.8239805194 -0.8239805194
PWK/PhJ both 41.4027777778 6.3918669681 54.0840597926 28.7214957629
WSB/EiJ both 45.0208333333 7.1041629473 59.1152902837 30.926376383




  GWAS USING LINEAR MIXED MODELS