Project measure / variable:   CSNA03   days_criteria_in_rev_JAX

ID, description, units MPD:110458   days_criteria_in_rev_JAX   number of days to meet criteria, (reversal learning assay), founders   [n]  reversal  
Data set, strains CSNA03   inbred w/CC8   8 strains     sex: both     age:
Procedure operant conditioning chamber
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  STRAIN COMPARISON PLOT
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CSNA03 - number of days to meet criteria, (reversal learning assay), founders reversal



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means4.1733   n 5.1805   n
Median of the strain means4.0516   n 5.25   n
SD of the strain means± 1.5268 ± 1.744
Coefficient of variation (CV)0.3658 0.3366
Min–max range of strain means2.125   –   6.125   n 3.1818   –   8.8   n
Mean sample size per strain7.6   mice 6.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 27.2574 27.2574 1.6527 0.2016
strain 7 219.036 31.2909 1.8973 0.0778
sex:strain 7 19.3694 2.7671 0.1678 0.991
Residuals 100 1649.2597 16.4926


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.3333 3.7859   3 2.1858 0.7099 1.0, 8.0 0.76
129S1/SvImJ m 5.5 4.3589   4 2.1794 0.7925 2.0, 11.0 0.18
A/J f 6.0 5.1769   6 2.1134 0.8628 2.0, 16.0 1.2
A/J m 8.8 8.1056   5 3.6249 0.9211 2.0, 19.0 2.08
C57BL/6J f 4.2143 3.534   14 0.9445 0.8386 1.0, 15.0 0.03
C57BL/6J m 5.5455 4.0339   11 1.2163 0.7274 2.0, 14.0 0.21
CAST/EiJ f 2.7 1.2517   10 0.39581 0.4636 1.0, 5.0 -0.96
CAST/EiJ m 4.25 4.8624   8 1.7191 1.1441 1.0, 15.0 -0.53
NOD/ShiLtJ f 2.125 0.99103   8 0.35038 0.4664 1.0, 4.0 -1.34
NOD/ShiLtJ m 3.1818 2.3587   11 0.71119 0.7413 1.0, 8.0 -1.15
NZO/HlLtJ f 3.0 1.7321   3 1.0 0.5774 2.0, 5.0 -0.77
NZO/HlLtJ m 3.5 3.5355   2   2.5 1.0102 1.0, 6.0 -0.96
PWK/PhJ f 3.8889 4.1966   9 1.3989 1.0791 2.0, 15.0 -0.19
PWK/PhJ m 5.0 3.0706   8 1.0856 0.6141 1.0, 9.0 -0.1
WSB/EiJ f 6.125 4.5493   8 1.6084 0.7427 2.0, 15.0 1.28
WSB/EiJ m 5.6667 6.7725   6 2.7649 1.1951 1.0, 19.0 0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.3333333333 2.3446816899 9.9851150261 0.6815516405
129S1/SvImJ m 5.5 2.0305539073 9.5285611188 1.4714388812
A/J f 6.0 1.6579403227 9.2893063796 2.7106936204
A/J m 8.8 1.8161826274 12.4032546053 5.1967453947
C57BL/6J f 4.2142857143 1.085376718 6.3676422098 2.0609292188
C57BL/6J m 5.5454545455 1.2244700776 7.9747683048 3.1161407862
CAST/EiJ f 2.7 1.2842350517 5.2478857657 0.1521142343
CAST/EiJ m 4.25 1.4358184374 7.0986228855 1.4013771145
NOD/ShiLtJ f 2.125 1.4358184374 4.9736228855 -0.7236228855
NOD/ShiLtJ m 3.1818181818 1.2244700776 5.6111319411 0.7525044225
NZO/HlLtJ f 3.0 2.3446816899 7.6517816928 -1.6517816928
NZO/HlLtJ m 3.5 2.8716368748 9.1972457711 -2.1972457711
PWK/PhJ f 3.8888888889 1.3537026048 6.5745963014 1.2031814763
PWK/PhJ m 5.0 1.4358184374 7.8486228855 2.1513771145
WSB/EiJ f 6.125 1.4358184374 8.9736228855 3.2763771145
WSB/EiJ m 5.6666666667 1.6579403227 8.9559730462 2.3773602871


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.4166666667 1.5508611638 8.4935310448 2.3398022885
A/J both 7.4 1.2295614513 9.8394148996 4.9605851004
C57BL/6J both 4.8798701299 0.8181334841 6.5030236606 3.2567165991
CAST/EiJ both 3.475 0.9631762888 5.3859143243 1.5640856757
NOD/ShiLtJ both 2.6534090909 0.9435175616 4.5253210603 0.7814971215
NZO/HlLtJ both 3.25 1.8536336321 6.9275563318 -0.4275563318
PWK/PhJ both 4.4444444444 0.9866718461 6.4019732852 2.4869156037
WSB/EiJ both 5.8958333333 1.0966244456 8.0715049999 3.7201616668




  GWAS USING LINEAR MIXED MODELS