Project measure / variable:   Golani1   SPTL

ID, description, units MPD:10912   SPTL   median spatial spread of lingering episodes, 30 min test, log transformed   [log(cm)]  
Data set, strains Golani1   inbred   8 strains     sex: m     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Golani1 - median spatial spread of lingering episodes, 30 min test, log transformed



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means0.795   log(cm)
Median of the strain means0.809   log(cm)
SD of the strain means± 0.211
Coefficient of variation (CV)0.265
Min–max range of strain means0.495   –   1.10   log(cm)
Mean sample size per strain34.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 10.7559 1.5366 10.121 < 0.0001
Residuals 268 40.6874 0.1518


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.644 0.343   34 0.0588 0.532 -0.04, 1.3 -0.72
A/J m 0.882 0.444   32 0.0785 0.504 0.2, 2.04 0.41
BALB/cByJ m 0.958 0.516   33 0.0898 0.538 0.25, 2.16 0.77
C3H/HeJ m 0.737 0.45   35 0.076 0.611 0.23, 2.04 -0.28
C57BL/6J m 0.591 0.317   36 0.0528 0.536 0.13, 1.17 -0.97
DBA/2J m 0.954 0.297   36 0.0494 0.311 0.46, 1.74 0.75
FVB/NJ m 0.495 0.235   36 0.0391 0.474 -0.01, 0.95 -1.43
SJL/J m 1.1 0.453   34 0.0777 0.413 0.3, 2.25 1.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.6444 0.0668 0.776 0.5128
A/J m 0.8816 0.0689 1.0172 0.7459
BALB/cByJ m 0.9582 0.0678 1.0917 0.8246
C3H/HeJ m 0.7366 0.0659 0.8662 0.6069
C57BL/6J m 0.5908 0.0649 0.7187 0.463
DBA/2J m 0.9539 0.0649 1.0817 0.826
FVB/NJ m 0.4953 0.0649 0.6231 0.3674
SJL/J m 1.0974 0.0668 1.2289 0.9658




  GWAS USING LINEAR MIXED MODELS