Phenotype measure:   Wahlsten1   center


  STRAIN COMPARISON PLOT
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Wahlsten1 - time spent in center 5 x 5 cm hub



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means15.2   s 16.8   s
Median of the strain means13.8   s 15.9   s
SD of the strain means± 4.79 ± 5.85
Coefficient of variation (CV)0.316 0.348
Min–max range of strain means9.35   –   24.9   s 8.75   –   29.0   s
Mean sample size per strain8.9   mice 8.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 203.8144 203.8144 3.8668 0.0501
strain 20 8606.8848 430.3442 8.1645 < 0.0001
sex:strain 20 2017.5854 100.8793 1.9139 0.0111
Residuals 329 17341.3269 52.7092


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 22.6 9.51   7 3.6 0.421 11.4, 39.3 1.55
129S1/SvImJ m 26.5 15.9   10 5.03 0.6 2.13, 57.7 1.66
A/J f 10.4 8.01   8 2.83 0.768 -0.99
A/J m 26.8 17.9   8 6.34 0.67 0.32, 52.8 1.71
AKR/J f 10.2 3.71   8 1.31 0.365 3.5, 14.6 -1.03
AKR/J m 13.6 4.27   8 1.51 0.315 7.44, 19.1 -0.55
BALB/cByJ f 17.3 9.57   10 3.03 0.553 1.98, 33.5 0.45
BALB/cByJ m 17.2 4.22   8 1.49 0.246 11.4, 25.1 0.07
BTBR T+ Itpr3tf/J f 11.5 4.13   12 1.19 0.358 4.4, 18.3 -0.76
BTBR T+ Itpr3tf/J m 11.5 3.7   5 1.65 0.323 7.4, 15.6 -0.9
C3H/HeJ f 12.5 3.22   8 1.14 0.258 7.39, 16.7 -0.55
C3H/HeJ m 19.9 3.94   8 1.39 0.198 13.6, 26.2 0.53
C57BL/6J f 13.6 4.97   8 1.76 0.367 7.28, 21.7 -0.32
C57BL/6J m 13.5 4.62   10 1.46 0.343 6.38, 20.8 -0.56
C57L/J f 24.4 4.81   10 1.52 0.197 16.0, 29.5 1.93
C57L/J m 20.1 1.58   6 0.647 0.0788 18.6, 22.6 0.56
C58/J f 12.4 2.69   8 0.952 0.218 9.08, 16.0 -0.57
C58/J m 17.7 8.29   10 2.62 0.468 7.54, 33.3 0.15
CAST/EiJ f 18.5 3.35   8 1.18 0.181 10.7, 21.3 0.7
CAST/EiJ m 22.0 8.43   9 2.81 0.384 11.2, 35.3 0.89
DBA/2J f 9.85 3.25   8 1.15 0.33 5.5, 15.9 -1.11
DBA/2J m 10.8 6.18   8 2.18 0.57 5.2, 24.6 -1.02
FVB/NJ f 19.0 4.77   10 1.51 0.251 12.6, 25.6 0.8
FVB/NJ m 18.1 3.47   11 1.05 0.192 14.6, 26.2 0.22
MOLF/EiJ f 12.8 3.57   8 1.26 0.278 7.09, 17.9 -0.49
MOLF/EiJ m 13.9 2.94   7 1.11 0.212 8.86, 18.0 -0.49
NOD/ShiLtJ f 20.6 9.36   12 2.7 0.455 1.14
NOD/ShiLtJ m 29.0 5.46   12 1.58 0.189 21.4, 41.2 2.09
NZB/BlNJ f 11.4 6.46   6 2.64 0.567 2.44, 22.3 -0.78
NZB/BlNJ m 8.75 3.17   12 0.915 0.362 2.68, 15.9 -1.37
PERA/EiJ f 14.4 3.68   10 1.16 0.256 9.36, 21.2 -0.16
PERA/EiJ m 14.4 7.39   11 2.23 0.515 0.16, 25.2 -0.41
PL/J f 14.5 4.63   12 1.34 0.32 7.8, 23.9 -0.14
PL/J m 15.9 3.51   8 1.24 0.221 11.1, 20.8 -0.15
SJL/J f 14.2 5.51   8 1.95 0.387 9.04, 26.6 -0.2
SJL/J m 10.7 4.37   10 1.38 0.41 1.0, 17.2 -1.04
SM/J f 24.9 8.89   14 2.38 0.357 15.6, 46.8 2.03
SM/J m 20.5 10.8   8 3.81 0.524 7.68, 41.7 0.63
SPRET/EiJ f 9.35 22.4   6 9.15 2.4 -1.21
SPRET/EiJ m 9.06 2.6   2   1.84 0.287 7.22, 10.9 -1.32
SWR/J f 13.8 2.96   9 0.986 0.214 8.88, 18.8 -0.28
SWR/J m 12.8 3.33   10 1.05 0.26 6.32, 17.9 -0.68


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 22.6 2.7441 27.9981 17.2019
129S1/SvImJ m 26.533 2.2958 31.0494 22.0166
A/J f 10.4225 2.5668 15.472 5.373
A/J m 26.765 2.5668 31.8145 21.7155
AKR/J f 10.1537 2.5668 15.2032 5.1043
AKR/J m 13.5725 2.5668 18.622 8.523
BALB/cByJ f 17.308 2.2958 21.8244 12.7916
BALB/cByJ m 17.1875 2.5668 22.237 12.138
BTBR T+ Itpr3tf/J f 11.54 2.0958 15.6629 7.4171
BTBR T+ Itpr3tf/J m 11.464 3.2468 17.8511 5.0769
C3H/HeJ f 12.4662 2.5668 17.5157 7.4168
C3H/HeJ m 19.875 2.5668 24.9245 14.8255
C57BL/6J f 13.5625 2.5668 18.612 8.513
C57BL/6J m 13.476 2.2958 17.9924 8.9596
C57L/J f 24.39 2.2958 28.9064 19.8736
C57L/J m 20.1167 2.9639 25.9473 14.286
C58/J f 12.3675 2.5668 17.417 7.318
C58/J m 17.704 2.2958 22.2204 13.1876
CAST/EiJ f 18.5375 2.5668 23.587 13.488
CAST/EiJ m 21.9556 2.42 26.7163 17.1949
DBA/2J f 9.85 2.5668 14.8995 4.8005
DBA/2J m 10.8288 2.5668 15.8782 5.7793
FVB/NJ f 18.98 2.2958 23.4964 14.4636
FVB/NJ m 18.0545 2.189 22.3608 13.7483
MOLF/EiJ f 12.8413 2.5668 17.8907 7.7918
MOLF/EiJ m 13.9086 2.7441 19.3067 8.5104
NOD/ShiLtJ f 20.5917 2.0958 24.7146 16.4688
NOD/ShiLtJ m 28.9583 2.0958 33.0812 24.8354
NZB/BlNJ f 11.405 2.9639 17.2356 5.5744
NZB/BlNJ m 8.7525 2.0958 12.8754 4.6296
PERA/EiJ f 14.39 2.2958 18.9064 9.8736
PERA/EiJ m 14.3527 2.189 18.6589 10.0465
PL/J f 14.48 2.0958 18.6029 10.3571
PL/J m 15.8625 2.5668 20.912 10.813
SJL/J f 14.24 2.5668 19.2895 9.1905
SJL/J m 10.652 2.2958 15.1684 6.1356
SM/J f 24.9286 1.9403 28.7456 21.1115
SM/J m 20.5475 2.5668 25.597 15.498
SPRET/EiJ f 9.3467 2.9639 15.1773 3.516
SPRET/EiJ m 9.06 5.1337 19.159 0.0
SWR/J f 13.8311 2.42 18.5918 9.0704
SWR/J m 12.802 2.2958 17.3184 8.2856


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 24.5665 1.7889 28.0856 21.0474
A/J both 18.5937 1.815 22.1643 15.0232
AKR/J both 11.8631 1.815 15.4336 8.2926
BALB/cByJ both 17.2477 1.7219 20.635 13.8605
BTBR T+ Itpr3tf/J both 11.502 1.9322 15.3031 7.7009
C3H/HeJ both 16.1706 1.815 19.7411 12.6001
C57BL/6J both 13.5192 1.7219 16.9065 10.132
C57L/J both 22.2533 1.8746 25.941 18.5657
C58/J both 15.0358 1.7219 18.423 11.6485
CAST/EiJ both 20.2465 1.7639 23.7165 16.7766
DBA/2J both 10.3394 1.815 13.9099 6.7689
FVB/NJ both 18.5173 1.5861 21.6374 15.3971
MOLF/EiJ both 13.3749 1.8787 17.0708 9.6791
NOD/ShiLtJ both 24.775 1.482 27.6903 21.8597
NZB/BlNJ both 10.0787 1.815 13.6493 6.5082
PERA/EiJ both 14.3714 1.5861 17.4915 11.2512
PL/J both 15.1712 1.6569 18.4307 11.9118
SJL/J both 12.446 1.7219 15.8333 9.0587
SM/J both 22.738 1.6088 25.903 19.5731
SPRET/EiJ both 9.2033 2.9639 15.034 3.3727
SWR/J both 13.3166 1.6679 16.5976 10.0355




  GWAS USING LINEAR MIXED MODELS