Project measure / variable:   Wahlsten1   dist_ave_EPM

ID, description, units MPD:10853   dist_ave_EPM   average distance traveled in 1 min   [cm]  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure elevated plus maze
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  STRAIN COMPARISON PLOT
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Wahlsten1 - average distance traveled in 1 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means283   cm 285   cm
Median of the strain means240   cm 239   cm
SD of the strain means± 168 ± 187
Coefficient of variation (CV)0.596 0.658
Min–max range of strain means48.9   –   682   cm 61.3   –   794   cm
Mean sample size per strain8.9   mice 8.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1460.7566 1460.7566 0.0488 0.8253
strain 20 9748511.0118 487425.5506 16.2911 < 0.0001
sex:strain 20 772802.429 38640.1215 1.2915 0.1817
Residuals 328 9813698.713 29919.8131


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 420.0 392.0   7 148.0 0.934 145.0, 1254.0 0.81
129S1/SvImJ m 157.0 101.0   10 31.9 0.643 67.0, 399.0 -0.68
A/J f 56.6 42.5   8 15.0 0.751 20.5, 157.0 -1.34
A/J m 61.3 36.6   8 12.9 0.598 9.12, 108.0 -1.19
AKR/J f 232.0 96.1   8 34.0 0.413 133.0, 397.0 -0.3
AKR/J m 203.0 47.3   7 17.9 0.233 122.0, 242.0 -0.44
BALB/cByJ f 161.0 65.4   10 20.7 0.405 72.5, 262.0 -0.72
BALB/cByJ m 251.0 59.9   8 21.2 0.239 168.0, 373.0 -0.18
BTBR T+ Itpr3tf/J f 682.0 372.0   12 107.0 0.545 287.0, 1272.0 2.37
BTBR T+ Itpr3tf/J m 794.0 545.0   5 244.0 0.686 179.0, 1362.0 2.72
C3H/HeJ f 202.0 56.4   8 20.0 0.279 108.0, 299.0 -0.48
C3H/HeJ m 190.0 74.2   8 26.2 0.39 47.5, 294.0 -0.5
C57BL/6J f 570.0 268.0   8 94.7 0.469 301.0, 1078.0 1.7
C57BL/6J m 753.0 433.0   10 137.0 0.575 192.0, 1189.0 2.5
C57L/J f 240.0 23.0   10 7.29 0.0961 208.0, 285.0 -0.25
C57L/J m 305.0 48.2   6 19.7 0.158 247.0, 370.0 0.11
C58/J f 554.0 288.0   8 102.0 0.52 239.0, 1082.0 1.61
C58/J m 382.0 207.0   10 65.4 0.541 102.0, 707.0 0.52
CAST/EiJ f 175.0 71.6   8 25.3 0.41 64.9, 295.0 -0.64
CAST/EiJ m 157.0 34.8   9 11.6 0.222 108.0, 213.0 -0.68
DBA/2J f 175.0 49.4   8 17.5 0.282 89.2, 225.0 -0.64
DBA/2J m 177.0 51.9   8 18.3 0.294 99.4, 259.0 -0.57
FVB/NJ f 274.0 67.6   10 21.4 0.247 168.0, 390.0 -0.05
FVB/NJ m 332.0 37.0   11 11.2 0.112 261.0, 379.0 0.25
MOLF/EiJ f 217.0 73.5   8 26.0 0.339 109.0, 345.0 -0.39
MOLF/EiJ m 202.0 63.9   7 24.1 0.316 147.0, 332.0 -0.44
NOD/ShiLtJ f 244.0 100.0   12 28.9 0.41 5.84, 360.0 -0.23
NOD/ShiLtJ m 286.0 60.8   12 17.6 0.213 202.0, 392.0 0.01
NZB/BlNJ f 463.0 361.0   6 147.0 0.78 102.0, 918.0 1.07
NZB/BlNJ m 466.0 275.0   12 79.4 0.59 129.0, 1058.0 0.97
PERA/EiJ f 189.0 55.1   10 17.4 0.291 85.9, 263.0 -0.56
PERA/EiJ m 134.0 52.2   11 15.7 0.389 53.3, 209.0 -0.8
PL/J f 314.0 128.0   12 36.9 0.407 152.0, 638.0 0.18
PL/J m 321.0 80.7   8 28.5 0.251 194.0, 415.0 0.19
SJL/J f 114.0 44.6   8 15.8 0.393 59.2, 177.0 -1.0
SJL/J m 159.0 77.6   10 24.5 0.488 57.0, 317.0 -0.67
SM/J f 328.0 150.0   14 40.2 0.459 105.0, 632.0 0.27
SM/J m 252.0 122.0   8 43.0 0.484 73.3, 408.0 -0.17
SPRET/EiJ f 48.9 34.9   6 14.2 0.713 11.8, 99.7 -1.39
SPRET/EiJ m 154.0 36.1   2   25.5 0.235 128.0, 179.0 -0.7
SWR/J f 281.0 89.5   9 29.8 0.318 196.0, 499.0 -0.01
SWR/J m 239.0 72.0   10 22.8 0.301 168.0, 375.0 -0.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 419.7143 65.3778 548.327 291.1016
129S1/SvImJ m 156.94 54.699 264.5451 49.3349
A/J f 56.55 61.1553 176.8562 0.0
A/J m 61.2775 61.1553 181.5837 0.0
AKR/J f 232.5 61.1553 352.8062 112.1938
AKR/J m 202.8571 65.3778 331.4699 74.2444
BALB/cByJ f 161.34 54.699 268.9451 53.7349
BALB/cByJ m 250.75 61.1553 371.0562 130.4438
BTBR T+ Itpr3tf/J f 682.25 49.9331 780.4796 584.0204
BTBR T+ Itpr3tf/J m 793.8 77.3561 945.9766 641.6234
C3H/HeJ f 202.5 61.1553 322.8062 82.1938
C3H/HeJ m 190.1875 61.1553 310.4937 69.8813
C57BL/6J f 570.5 61.1553 690.8062 450.1938
C57BL/6J m 753.3 54.699 860.9051 645.6949
C57L/J f 239.9 54.699 347.5051 132.2949
C57L/J m 305.1667 70.6161 444.0843 166.249
C58/J f 554.0 61.1553 674.3062 433.6938
C58/J m 382.1 54.699 489.7051 274.4949
CAST/EiJ f 174.6125 61.1553 294.9187 54.3063
CAST/EiJ m 156.5556 57.6578 269.9813 43.1298
DBA/2J f 175.4 61.1553 295.7062 55.0938
DBA/2J m 176.55 61.1553 296.8562 56.2438
FVB/NJ f 273.5 54.699 381.1051 165.8949
FVB/NJ m 331.6364 52.1535 434.2338 229.0389
MOLF/EiJ f 217.0 61.1553 337.3062 96.6938
MOLF/EiJ m 201.8571 65.3778 330.4699 73.2444
NOD/ShiLtJ f 244.32 49.9331 342.5496 146.0904
NOD/ShiLtJ m 285.5833 49.9331 383.8129 187.3537
NZB/BlNJ f 462.8333 70.6161 601.751 323.9157
NZB/BlNJ m 465.8333 49.9331 564.0629 367.6037
PERA/EiJ f 189.09 54.699 296.6951 81.4849
PERA/EiJ m 134.2364 52.1535 236.8338 31.6389
PL/J f 313.5 49.9331 411.7296 215.2704
PL/J m 321.25 61.1553 441.5562 200.9438
SJL/J f 113.6625 61.1553 233.9687 0.0
SJL/J m 158.98 54.699 266.5851 51.3749
SM/J f 327.5 46.2291 418.4429 236.5571
SM/J m 251.5375 61.1553 371.8437 131.2313
SPRET/EiJ f 48.9167 70.6161 187.8343 0.0
SPRET/EiJ m 153.5 122.3107 394.1124 0.0
SWR/J f 281.2222 57.6578 394.648 167.7965
SWR/J m 239.0 54.699 346.6051 131.3949


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 288.3271 42.6211 372.1724 204.4819
A/J both 58.9137 43.2434 143.9831 0.0
AKR/J both 217.6786 44.7611 305.7337 129.6235
BALB/cByJ both 206.045 41.0243 286.7489 125.3411
BTBR T+ Itpr3tf/J both 738.025 46.0361 828.5882 647.4618
C3H/HeJ both 196.3438 43.2434 281.4131 111.2744
C57BL/6J both 661.9 41.0243 742.6039 581.1961
C57L/J both 272.5333 44.6616 360.3926 184.6741
C58/J both 468.05 41.0243 548.7539 387.3461
CAST/EiJ both 165.584 42.025 248.2566 82.9115
DBA/2J both 175.975 43.2434 261.0443 90.9057
FVB/NJ both 302.5682 37.7888 376.9071 228.2293
MOLF/EiJ both 209.4286 44.7611 297.4837 121.3735
NOD/ShiLtJ both 264.9517 35.3081 334.4105 195.4929
NZB/BlNJ both 464.3333 43.2434 549.4027 379.264
PERA/EiJ both 161.6632 37.7888 236.0021 87.3243
PL/J both 317.375 39.4756 395.0323 239.7177
SJL/J both 136.3212 41.0243 217.0251 55.6174
SM/J both 289.5187 38.3311 364.9246 214.1129
SPRET/EiJ both 101.2083 70.6161 240.126 0.0
SWR/J both 260.1111 39.7379 338.2844 181.9378




  GWAS USING LINEAR MIXED MODELS