Phenotype measure:   Wahlsten1   close


  STRAIN COMPARISON PLOT
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Wahlsten1 - time spent in two closed arms



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means28.3   s 27.0   s
Median of the strain means26.1   s 25.5   s
SD of the strain means± 9.57 ± 8.94
Coefficient of variation (CV)0.338 0.331
Min–max range of strain means10.8   –   45.9   s 12.9   –   46.8   s
Mean sample size per strain8.9   mice 8.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 104.4863 104.4863 0.9353 0.3342
strain 20 22577.1845 1128.8592 10.1051 < 0.0001
sex:strain 20 4024.2476 201.2124 1.8012 0.0195
Residuals 329 36753.2993 111.7122


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.8 12.4   7 4.67 1.14 0.1, 29.5 -1.83
129S1/SvImJ m 12.9 18.1   10 5.74 1.41 0.4, 57.9 -1.58
A/J f 45.9 10.8   8 3.82 0.236 27.1, 60.0 1.84
A/J m 21.9 18.2   8 6.43 0.832 -0.57
AKR/J f 40.9 5.07   8 1.79 0.124 33.3, 49.4 1.31
AKR/J m 40.1 6.82   8 2.41 0.17 29.3, 51.3 1.46
BALB/cByJ f 30.0 16.6   10 5.24 0.551 5.48, 58.0 0.17
BALB/cByJ m 23.9 8.49   8 3.0 0.355 14.3, 35.7 -0.35
BTBR T+ Itpr3tf/J f 24.7 10.6   12 3.07 0.431 7.67, 42.1 -0.38
BTBR T+ Itpr3tf/J m 13.6 5.48   5 2.45 0.403 6.45, 20.1 -1.5
C3H/HeJ f 32.7 11.9   8 4.2 0.363 16.5, 52.5 0.46
C3H/HeJ m 25.7 9.53   8 3.37 0.371 12.1, 46.1 -0.15
C57BL/6J f 26.1 5.17   8 1.83 0.198 19.8, 35.4 -0.23
C57BL/6J m 29.5 8.25   10 2.61 0.28 18.3, 42.5 0.28
C57L/J f 25.6 5.8   10 1.83 0.227 16.1, 35.0 -0.29
C57L/J m 25.5 4.46   6 1.82 0.175 21.5, 31.9 -0.17
C58/J f 24.4 11.7   8 4.12 0.479 3.06, 38.9 -0.41
C58/J m 30.1 7.57   10 2.39 0.251 18.3, 41.6 0.34
CAST/EiJ f 14.7 11.7   8 4.12 0.793 0.69, 38.6 -1.43
CAST/EiJ m 23.2 9.02   9 3.01 0.389 10.8, 39.0 -0.43
DBA/2J f 42.3 6.99   8 2.47 0.165 28.3, 50.8 1.46
DBA/2J m 40.2 5.57   8 1.97 0.139 33.9, 47.2 1.47
FVB/NJ f 25.1 5.15   10 1.63 0.205 19.0, 34.9 -0.34
FVB/NJ m 20.5 3.08   11 0.928 0.15 15.3, 26.6 -0.73
MOLF/EiJ f 38.0 4.08   8 1.44 0.108 31.7, 43.9 1.01
MOLF/EiJ m 36.6 3.66   7 1.38 0.0998 32.1, 41.5 1.07
NOD/ShiLtJ f 18.8 10.1   12 2.92 0.538 -1.0
NOD/ShiLtJ m 18.1 6.61   12 1.91 0.366 6.24, 27.8 -1.0
NZB/BlNJ f 34.5 12.7   6 5.18 0.368 25.3, 57.6 0.64
NZB/BlNJ m 36.3 11.7   12 3.39 0.324 13.3, 57.0 1.04
PERA/EiJ f 27.7 9.33   10 2.95 0.337 13.8, 45.8 -0.07
PERA/EiJ m 31.1 13.7   11 4.15 0.442 13.5, 59.4 0.46
PL/J f 26.0 8.79   12 2.54 0.339 5.6, 39.6 -0.24
PL/J m 24.2 6.92   8 2.45 0.286 13.3, 34.0 -0.32
SJL/J f 31.5 8.99   8 3.18 0.285 19.0, 46.8 0.33
SJL/J m 25.9 13.0   10 4.12 0.504 8.57, 49.3 -0.13
SM/J f 14.5 7.38   14 1.97 0.51 1.34, 32.1 -1.45
SM/J m 19.0 17.0   8 6.02 0.898 5.24, 52.1 -0.9
SPRET/EiJ f 39.5 30.1   6 12.3 0.761 1.17
SPRET/EiJ m 46.8 4.24   2   3.0 0.0907 43.8, 49.8 2.21
SWR/J f 21.4 5.93   9 1.98 0.277 9.22, 27.4 -0.73
SWR/J m 22.3 7.31   10 2.31 0.327 11.0, 34.6 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.8386 3.9949 18.6973 2.9799
129S1/SvImJ m 12.87 3.3423 19.445 6.295
A/J f 45.875 3.7368 53.2261 38.5239
A/J m 21.85 3.7368 29.2011 14.4989
AKR/J f 40.8875 3.7368 48.2386 33.5364
AKR/J m 40.075 3.7368 47.4261 32.7239
BALB/cByJ f 30.048 3.3423 36.623 23.473
BALB/cByJ m 23.9125 3.7368 31.2636 16.5614
BTBR T+ Itpr3tf/J f 24.6725 3.0511 30.6747 18.6703
BTBR T+ Itpr3tf/J m 13.59 4.7268 22.8885 4.2915
C3H/HeJ f 32.7375 3.7368 40.0886 25.3864
C3H/HeJ m 25.675 3.7368 33.0261 18.3239
C57BL/6J f 26.0625 3.7368 33.4136 18.7114
C57BL/6J m 29.51 3.3423 36.085 22.935
C57L/J f 25.58 3.3423 32.155 19.005
C57L/J m 25.5167 4.3149 34.005 17.0283
C58/J f 24.3575 3.7368 31.7086 17.0064
C58/J m 30.14 3.3423 36.715 23.565
CAST/EiJ f 14.7 3.7368 22.0511 7.3489
CAST/EiJ m 23.1778 3.5231 30.1085 16.2471
DBA/2J f 42.325 3.7368 49.6761 34.9739
DBA/2J m 40.175 3.7368 47.5261 32.8239
FVB/NJ f 25.06 3.3423 31.635 18.485
FVB/NJ m 20.5182 3.1868 26.7872 14.2491
MOLF/EiJ f 37.9875 3.7368 45.3386 30.6364
MOLF/EiJ m 36.6429 3.9949 44.5015 28.7842
NOD/ShiLtJ f 18.8067 3.0511 24.8088 12.8045
NOD/ShiLtJ m 18.0533 3.0511 24.0555 12.0512
NZB/BlNJ f 34.5 4.3149 42.9883 26.0117
NZB/BlNJ m 36.2583 3.0511 42.2605 30.2562
PERA/EiJ f 27.72 3.3423 34.295 21.145
PERA/EiJ m 31.1182 3.1868 37.3872 24.8491
PL/J f 25.975 3.0511 31.9772 19.9728
PL/J m 24.175 3.7368 31.5261 16.8239
SJL/J f 31.5 3.7368 38.8511 24.1489
SJL/J m 25.857 3.3423 32.432 19.282
SM/J f 14.4529 2.8248 20.0098 8.8959
SM/J m 18.965 3.7368 26.3161 11.6139
SPRET/EiJ f 39.5217 4.3149 48.01 31.0333
SPRET/EiJ m 46.8 7.4737 61.5023 32.0977
SWR/J f 21.4022 3.5231 28.3329 14.4715
SWR/J m 22.34 3.3423 28.915 15.765


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 11.8543 2.6043 16.9775 6.7311
A/J both 33.8625 2.6423 39.0605 28.6645
AKR/J both 40.4813 2.6423 45.6793 35.2832
BALB/cByJ both 26.9802 2.5068 31.9115 22.049
BTBR T+ Itpr3tf/J both 19.1312 2.813 24.665 13.5975
C3H/HeJ both 29.2063 2.6423 34.4043 24.0082
C57BL/6J both 27.7862 2.5068 32.7175 22.855
C57L/J both 25.5483 2.729 30.9168 20.1798
C58/J both 27.2488 2.5068 32.18 22.3175
CAST/EiJ both 18.9389 2.5679 23.9905 13.8873
DBA/2J both 41.25 2.6423 46.448 36.052
FVB/NJ both 22.7891 2.3091 27.3315 18.2467
MOLF/EiJ both 37.3152 2.7351 42.6957 31.9347
NOD/ShiLtJ both 18.43 2.1575 22.6742 14.1858
NZB/BlNJ both 35.3792 2.6423 40.5772 30.1811
PERA/EiJ both 29.4191 2.3091 33.9615 24.8767
PL/J both 25.075 2.4121 29.8201 20.3299
SJL/J both 28.6785 2.5068 33.6098 23.7472
SM/J both 16.7089 2.3422 21.3165 12.1014
SPRET/EiJ both 43.1608 4.3149 51.6492 34.6725
SWR/J both 21.8711 2.4282 26.6478 17.0944




  GWAS USING LINEAR MIXED MODELS