Phenotype measure:   Wahlsten1   speed_ave_EPM


  STRAIN COMPARISON PLOT
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Wahlsten1 - speed when moving; average over 5 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means4.72   cm/sec 4.74   cm/sec
Median of the strain means4.00   cm/sec 3.98   cm/sec
SD of the strain means± 2.81 ± 3.12
Coefficient of variation (CV)0.596 0.659
Min–max range of strain means0.815   –   11.4   cm/sec 1.02   –   13.2   cm/sec
Mean sample size per strain8.9   mice 8.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.4025 0.4025 0.0485 0.8259
strain 20 2707.1609 135.358 16.3062 < 0.0001
sex:strain 20 214.3134 10.7157 1.2909 0.182
Residuals 328 2722.7342 8.301


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 7.0 6.53   7 2.47 0.934 2.42, 20.9 0.81
129S1/SvImJ m 2.61 1.68   10 0.531 0.642 1.12, 6.64 -0.68
A/J f 0.941 0.706   8 0.25 0.75 0.34, 2.61 -1.34
A/J m 1.02 0.611   8 0.216 0.598 0.15, 1.8 -1.19
AKR/J f 3.88 1.6   8 0.566 0.412 2.22, 6.62 -0.3
AKR/J m 3.38 0.791   7 0.299 0.234 2.03, 4.04 -0.44
BALB/cByJ f 2.69 1.09   10 0.345 0.405 1.21, 4.36 -0.72
BALB/cByJ m 4.18 0.998   8 0.353 0.239 2.79, 6.21 -0.18
BTBR T+ Itpr3tf/J f 11.4 6.19   12 1.79 0.544 4.79, 21.2 2.38
BTBR T+ Itpr3tf/J m 13.2 9.07   5 4.06 0.686 2.99, 22.7 2.71
C3H/HeJ f 3.37 0.94   8 0.332 0.279 1.8, 4.98 -0.48
C3H/HeJ m 3.17 1.24   8 0.437 0.39 0.79, 4.9 -0.5
C57BL/6J f 9.52 4.47   8 1.58 0.47 5.02, 18.0 1.71
C57BL/6J m 12.6 7.22   10 2.28 0.575 3.2, 19.8 2.52
C57L/J f 4.0 0.38   10 0.12 0.0951 3.47, 4.74 -0.26
C57L/J m 5.09 0.8   6 0.327 0.157 4.12, 6.17 0.11
C58/J f 9.23 4.79   8 1.69 0.519 3.99, 18.0 1.6
C58/J m 6.37 3.45   10 1.09 0.541 1.71, 11.8 0.52
CAST/EiJ f 2.91 1.19   8 0.422 0.41 1.08, 4.92 -0.64
CAST/EiJ m 2.61 0.582   9 0.194 0.223 1.8, 3.55 -0.68
DBA/2J f 2.93 0.824   8 0.291 0.282 1.49, 3.75 -0.64
DBA/2J m 2.94 0.861   8 0.304 0.293 1.66, 4.31 -0.58
FVB/NJ f 4.56 1.12   10 0.356 0.247 2.81, 6.5 -0.06
FVB/NJ m 5.53 0.617   11 0.186 0.112 4.34, 6.32 0.25
MOLF/EiJ f 3.62 1.23   8 0.433 0.339 1.82, 5.75 -0.39
MOLF/EiJ m 3.37 1.06   7 0.401 0.315 2.46, 5.53 -0.44
NOD/ShiLtJ f 4.07 1.67   12 0.482 0.41 0.1, 6.01 -0.23
NOD/ShiLtJ m 4.76 1.01   12 0.293 0.213 3.36, 6.53 0.01
NZB/BlNJ f 7.72 6.02   6 2.46 0.78 1.7, 15.3 1.07
NZB/BlNJ m 7.77 4.58   12 1.32 0.59 2.15, 17.6 0.97
PERA/EiJ f 3.15 0.917   10 0.29 0.291 1.43, 4.39 -0.56
PERA/EiJ m 2.24 0.868   11 0.262 0.388 0.89, 3.48 -0.8
PL/J f 5.22 2.12   12 0.613 0.406 2.53, 10.6 0.18
PL/J m 5.36 1.35   8 0.476 0.251 3.23, 6.92 0.2
SJL/J f 1.9 0.742   8 0.262 0.391 0.99, 2.95 -1.0
SJL/J m 2.65 1.29   10 0.409 0.488 0.95, 5.28 -0.67
SM/J f 5.46 2.5   14 0.668 0.458 1.75, 10.5 0.26
SM/J m 4.19 2.03   8 0.717 0.484 1.22, 6.8 -0.18
SPRET/EiJ f 0.815 0.58   6 0.237 0.712 0.2, 1.66 -1.39
SPRET/EiJ m 2.55 0.601   2   0.425 0.235 2.13, 2.98 -0.7
SWR/J f 4.69 1.49   9 0.498 0.318 3.27, 8.32 -0.01
SWR/J m 3.98 1.2   10 0.38 0.302 2.79, 6.25 -0.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6.9957 1.089 9.138 4.8535
129S1/SvImJ m 2.615 0.9111 4.4073 0.8227
A/J f 0.9412 1.0186 2.9451 0.0
A/J m 1.0212 1.0186 3.0251 0.0
AKR/J f 3.88 1.0186 5.8839 1.8761
AKR/J m 3.38 1.089 5.5223 1.2377
BALB/cByJ f 2.691 0.9111 4.4833 0.8987
BALB/cByJ m 4.1788 1.0186 6.1826 2.1749
BTBR T+ Itpr3tf/J f 11.3617 0.8317 12.9978 9.7255
BTBR T+ Itpr3tf/J m 13.222 1.2885 15.7567 10.6873
C3H/HeJ f 3.3738 1.0186 5.3776 1.3699
C3H/HeJ m 3.17 1.0186 5.1739 1.1661
C57BL/6J f 9.5175 1.0186 11.5214 7.5136
C57BL/6J m 12.556 0.9111 14.3483 10.7637
C57L/J f 3.998 0.9111 5.7903 2.2057
C57L/J m 5.0883 1.1762 7.4022 2.7744
C58/J f 9.2337 1.0186 11.2376 7.2299
C58/J m 6.373 0.9111 8.1653 4.5807
CAST/EiJ f 2.9113 1.0186 4.9151 0.9074
CAST/EiJ m 2.6111 0.9604 4.5004 0.7218
DBA/2J f 2.9263 1.0186 4.9301 0.9224
DBA/2J m 2.9425 1.0186 4.9464 0.9386
FVB/NJ f 4.56 0.9111 6.3523 2.7677
FVB/NJ m 5.5264 0.8687 7.2353 3.8174
MOLF/EiJ f 3.6163 1.0186 5.6201 1.6124
MOLF/EiJ m 3.3686 1.089 5.5108 1.2263
NOD/ShiLtJ f 4.0725 0.8317 5.7087 2.4363
NOD/ShiLtJ m 4.7583 0.8317 6.3945 3.1222
NZB/BlNJ f 7.72 1.1762 10.0339 5.4061
NZB/BlNJ m 7.7667 0.8317 9.4028 6.1305
PERA/EiJ f 3.151 0.9111 4.9433 1.3587
PERA/EiJ m 2.2382 0.8687 3.9471 0.5293
PL/J f 5.2208 0.8317 6.857 3.5847
PL/J m 5.3562 1.0186 7.3601 3.3524
SJL/J f 1.8963 1.0186 3.9001 0.0
SJL/J m 2.651 0.9111 4.4433 0.8587
SM/J f 5.4557 0.77 6.9705 3.9409
SM/J m 4.1925 1.0186 6.1964 2.1886
SPRET/EiJ f 0.815 1.1762 3.1289 0.0
SPRET/EiJ m 2.555 2.0373 6.5628 0.0
SWR/J f 4.6878 0.9604 6.5771 2.7985
SWR/J m 3.98 0.9111 5.7723 2.1877


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 4.8054 0.7099 6.2019 3.4088
A/J both 0.9812 0.7203 2.3982 0.0
AKR/J both 3.63 0.7456 5.0967 2.1633
BALB/cByJ both 3.4349 0.6833 4.7791 2.0906
BTBR T+ Itpr3tf/J both 12.2918 0.7668 13.8003 10.7834
C3H/HeJ both 3.2719 0.7203 4.6888 1.8549
C57BL/6J both 11.0368 0.6833 12.381 9.6925
C57L/J both 4.5432 0.7439 6.0066 3.0797
C58/J both 7.8034 0.6833 9.1476 6.4591
CAST/EiJ both 2.7612 0.7 4.1382 1.3841
DBA/2J both 2.9344 0.7203 4.3513 1.5174
FVB/NJ both 5.0432 0.6294 6.2814 3.8049
MOLF/EiJ both 3.4924 0.7456 4.9591 2.0257
NOD/ShiLtJ both 4.4154 0.5881 5.5724 3.2585
NZB/BlNJ both 7.7433 0.7203 9.1603 6.3264
PERA/EiJ both 2.6946 0.6294 3.9328 1.4564
PL/J both 5.2885 0.6575 6.582 3.995
SJL/J both 2.2736 0.6833 3.6179 0.9294
SM/J both 4.8241 0.6385 6.0801 3.5681
SPRET/EiJ both 1.685 1.1762 3.9989 0.0
SWR/J both 4.3339 0.6619 5.636 3.0318




  GWAS USING LINEAR MIXED MODELS