Project measure / variable:   Wahlsten1   dist_EPM_min5

ID, description, units MPD:10844   dist_EPM_min5   distance traveled in 1 min   [cm]  during minute 5  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure elevated plus maze
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  STRAIN COMPARISON PLOT
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Wahlsten1 - distance traveled in 1 min during minute 5



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means254   cm 267   cm
Median of the strain means194   cm 196   cm
SD of the strain means± 166 ± 195
Coefficient of variation (CV)0.652 0.727
Min–max range of strain means14.6   –   665   cm 56.0   –   792   cm
Mean sample size per strain8.9   mice 8.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 10315.352 10315.352 0.2687 0.6046
strain 20 9407806.4881 470390.3244 12.2514 < 0.0001
sex:strain 20 1219051.8347 60952.5917 1.5875 0.0535
Residuals 328 12593451.3728 38394.6688


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 368.0 395.0   7 149.0 1.07 68.5, 1187.0 0.69
129S1/SvImJ m 120.0 69.8   10 22.1 0.583 21.8, 206.0 -0.76
A/J f 64.9 44.7   8 15.8 0.688 9.7, 139.0 -1.14
A/J m 56.0 45.1   8 16.0 0.807 12.5, 139.0 -1.09
AKR/J f 253.0 120.0   8 42.5 0.475 112.0, 480.0 -0.01
AKR/J m 183.0 43.3   7 16.4 0.237 121.0, 230.0 -0.43
BALB/cByJ f 80.1 66.3   10 21.0 0.827 9.5, 192.0 -1.05
BALB/cByJ m 235.0 90.4   8 32.0 0.385 65.6, 321.0 -0.17
BTBR T+ Itpr3tf/J f 553.0 366.0   12 106.0 0.661 160.0, 1159.0 1.8
BTBR T+ Itpr3tf/J m 792.0 654.0   5 292.0 0.825 101.0, 1524.0 2.7
C3H/HeJ f 214.0 77.2   8 27.3 0.361 96.6, 318.0 -0.24
C3H/HeJ m 170.0 97.8   8 34.6 0.575 48.1, 347.0 -0.5
C57BL/6J f 493.0 278.0   8 98.3 0.564 150.0, 1000.0 1.44
C57BL/6J m 751.0 546.0   10 173.0 0.727 140.0, 1450.0 2.49
C57L/J f 170.0 43.3   10 13.7 0.254 74.5, 222.0 -0.51
C57L/J m 236.0 41.8   6 17.1 0.177 172.0, 284.0 -0.16
C58/J f 665.0 342.0   8 121.0 0.513 249.0, 1265.0 2.48
C58/J m 441.0 189.0   10 59.7 0.428 87.8, 623.0 0.89
CAST/EiJ f 186.0 99.5   8 35.2 0.536 21.0, 376.0 -0.41
CAST/EiJ m 156.0 81.9   9 27.3 0.527 -0.57
DBA/2J f 138.0 107.0   8 37.8 0.775 12.1, 294.0 -0.7
DBA/2J m 204.0 74.2   8 26.2 0.364 71.1, 289.0 -0.33
FVB/NJ f 244.0 47.7   10 15.1 0.195 178.0, 327.0 -0.06
FVB/NJ m 273.0 48.2   11 14.5 0.176 177.0, 368.0 0.03
MOLF/EiJ f 194.0 104.0   8 36.7 0.534 81.7, 381.0 -0.36
MOLF/EiJ m 174.0 88.1   7 33.3 0.507 89.3, 304.0 -0.48
NOD/ShiLtJ f 190.0 110.0   12 31.9 0.582 7.3, 408.0 -0.39
NOD/ShiLtJ m 193.0 56.8   12 16.4 0.295 97.2, 264.0 -0.38
NZB/BlNJ f 417.0 349.0   6 143.0 0.836 72.8, 905.0 0.98
NZB/BlNJ m 462.0 328.0   12 94.7 0.711 153.0, 1121.0 1.0
PERA/EiJ f 173.0 94.3   10 29.8 0.544 2.9, 280.0 -0.49
PERA/EiJ m 129.0 70.0   11 21.1 0.543 2.3, 210.0 -0.71
PL/J f 285.0 170.0   12 49.2 0.598 130.0, 779.0 0.19
PL/J m 213.0 107.0   8 37.9 0.504 53.6, 337.0 -0.28
SJL/J f 133.0 81.2   8 28.7 0.611 4.5, 279.0 -0.73
SJL/J m 196.0 77.3   10 24.5 0.395 90.3, 330.0 -0.37
SM/J f 335.0 186.0   14 49.8 0.557 94.7, 717.0 0.49
SM/J m 337.0 158.0   8 56.0 0.47 116.0, 536.0 0.36
SPRET/EiJ f 14.6 16.1   6 6.57 1.1 -1.44
SPRET/EiJ m 110.0 9.19   2   6.5 0.0839 103.0, 116.0 -0.81
SWR/J f 165.0 61.6   9 20.5 0.373 65.1, 303.0 -0.54
SWR/J m 184.0 70.6   10 22.3 0.384 84.1, 314.0 -0.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 367.9286 74.0605 513.622 222.2351
129S1/SvImJ m 119.85 61.9634 241.7459 0.0
A/J f 64.9125 69.2772 201.1962 0.0
A/J m 55.95 69.2772 192.2337 0.0
AKR/J f 253.375 69.2772 389.6587 117.0913
AKR/J m 182.8571 74.0605 328.5506 37.1637
BALB/cByJ f 80.12 61.9634 202.0159 0.0
BALB/cByJ m 234.7 69.2772 370.9837 98.4163
BTBR T+ Itpr3tf/J f 553.1667 56.5646 664.4419 441.8915
BTBR T+ Itpr3tf/J m 792.4 87.6295 964.7868 620.0132
C3H/HeJ f 213.95 69.2772 350.2337 77.6663
C3H/HeJ m 170.1 69.2772 306.3837 33.8163
C57BL/6J f 493.0 69.2772 629.2837 356.7163
C57BL/6J m 750.6 61.9634 872.4959 628.7041
C57L/J f 170.25 61.9634 292.1459 48.3541
C57L/J m 236.5 79.9944 393.8669 79.1331
C58/J f 665.125 69.2772 801.4087 528.8413
C58/J m 441.28 61.9634 563.1759 319.3841
CAST/EiJ f 185.625 69.2772 321.9087 49.3413
CAST/EiJ m 155.5333 65.3152 284.0229 27.0438
DBA/2J f 137.9125 69.2772 274.1962 1.6288
DBA/2J m 204.0125 69.2772 340.2962 67.7288
FVB/NJ f 244.4 61.9634 366.2959 122.5041
FVB/NJ m 273.4545 59.0798 389.6777 157.2314
MOLF/EiJ f 194.4625 69.2772 330.7462 58.1788
MOLF/EiJ m 173.9429 74.0605 319.6363 28.2494
NOD/ShiLtJ f 189.5917 56.5646 300.8669 78.3165
NOD/ShiLtJ m 192.9333 56.5646 304.2085 81.6581
NZB/BlNJ f 417.4667 79.9944 574.8336 260.0998
NZB/BlNJ m 461.75 56.5646 573.0252 350.4748
PERA/EiJ f 173.43 61.9634 295.3259 51.5341
PERA/EiJ m 129.0364 59.0798 245.2595 12.8132
PL/J f 285.25 56.5646 396.5252 173.9748
PL/J m 212.6 69.2772 348.8837 76.3163
SJL/J f 132.875 69.2772 269.1587 0.0
SJL/J m 195.83 61.9634 317.7259 73.9341
SM/J f 334.7643 52.3687 437.7851 231.7435
SM/J m 336.875 69.2772 473.1587 200.5913
SPRET/EiJ f 14.6167 79.9944 171.9836 0.0
SPRET/EiJ m 109.5 138.5544 382.0675 0.0
SWR/J f 165.3444 65.3152 293.834 36.8549
SWR/J m 183.81 61.9634 305.7059 61.9141


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 243.8893 48.2815 338.8698 148.9088
A/J both 60.4312 48.9864 156.7984 0.0
AKR/J both 218.1161 50.7057 317.8656 118.3666
BALB/cByJ both 157.41 46.4726 248.8319 65.9881
BTBR T+ Itpr3tf/J both 672.7833 52.15 775.374 570.1927
C3H/HeJ both 192.025 48.9864 288.3922 95.6578
C57BL/6J both 621.8 46.4726 713.2219 530.3781
C57L/J both 203.375 50.5929 302.9026 103.8474
C58/J both 553.2025 46.4726 644.6244 461.7806
CAST/EiJ both 170.5792 47.6062 264.2312 76.9271
DBA/2J both 170.9625 48.9864 267.3297 74.5953
FVB/NJ both 258.9273 42.8074 343.139 174.7156
MOLF/EiJ both 184.2027 50.7057 283.9522 84.4532
NOD/ShiLtJ both 191.2625 39.9972 269.946 112.579
NZB/BlNJ both 439.6083 48.9864 535.9755 343.2412
PERA/EiJ both 151.2332 42.8074 235.4449 67.0215
PL/J both 248.925 44.7183 336.8958 160.9542
SJL/J both 164.3525 46.4726 255.7744 72.9306
SM/J both 335.8196 43.4218 421.24 250.3993
SPRET/EiJ both 62.0583 79.9944 219.4252 0.0
SWR/J both 174.5772 45.0154 263.1325 86.0219




  GWAS USING LINEAR MIXED MODELS