Project measure / variable:   Wahlsten1   speed_ave_OFT

ID, description, units MPD:10825   speed_ave_OFT   average speed over 5 min trial   [cm/sec]  
Data set, strains Wahlsten1   inbred   21 strains     sex: both     age: 9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Wahlsten1 - average speed over 5 min trial



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means7.97   cm/sec 7.67   cm/sec
Median of the strain means8.55   cm/sec 8.30   cm/sec
SD of the strain means± 2.51 ± 2.57
Coefficient of variation (CV)0.315 0.336
Min–max range of strain means3.21   –   12.3   cm/sec 2.52   –   13.7   cm/sec
Mean sample size per strain9.7   mice 9.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 17.8444 17.8444 4.5151 0.0343
strain 20 2439.954 121.9977 30.8685 < 0.0001
sex:strain 20 90.3734 4.5187 1.1433 0.3029
Residuals 354 1399.0697 3.9522


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.29 1.66   10 0.525 0.387 2.36, 6.76 -1.47
129S1/SvImJ m 3.82 1.08   10 0.342 0.283 1.61, 5.47 -1.5
A/J f 3.21 0.918   8 0.324 0.286 1.47, 4.46 -1.9
A/J m 2.52 1.2   9 0.401 0.478 0.83, 4.05 -2.0
AKR/J f 8.67 2.44   10 0.772 0.282 6.08, 13.3 0.28
AKR/J m 8.48 1.2   8 0.425 0.142 6.29, 10.4 0.32
BALB/cByJ f 8.29 0.78   10 0.247 0.094 6.71, 9.35 0.13
BALB/cByJ m 8.3 3.92   10 1.24 0.472 4.85, 19.0 0.25
BTBR T+ Itpr3tf/J f 9.01 2.41   12 0.696 0.268 3.99, 11.7 0.41
BTBR T+ Itpr3tf/J m 8.87 0.938   6 0.383 0.106 7.19, 9.78 0.47
C3H/HeJ f 4.5 0.452   10 0.143 0.1 3.92, 5.1 -1.38
C3H/HeJ m 4.26 0.779   8 0.276 0.183 3.4, 5.6 -1.32
C57BL/6J f 10.6 1.41   8 0.498 0.132 8.45, 13.0 1.05
C57BL/6J m 8.69 2.28   10 0.722 0.263 5.64, 13.8 0.4
C57L/J f 10.2 1.06   10 0.335 0.103 8.59, 11.9 0.89
C57L/J m 10.5 1.68   8 0.593 0.159 7.52, 12.6 1.1
C58/J f 11.9 5.19   10 1.64 0.436 4.13, 20.9 1.57
C58/J m 10.4 2.51   10 0.795 0.242 6.12, 15.2 1.06
CAST/EiJ f 8.09 2.54   10 0.803 0.314 5.88, 14.5 0.05
CAST/EiJ m 7.61 1.65   9 0.552 0.218 4.6, 10.6 -0.02
DBA/2J f 5.69 1.57   10 0.495 0.275 2.6, 8.62 -0.91
DBA/2J m 6.0 2.14   8 0.756 0.356 1.19, 7.69 -0.65
FVB/NJ f 9.18 1.21   10 0.382 0.132 6.69, 11.3 0.48
FVB/NJ m 10.3 1.15   11 0.346 0.111 7.62, 11.9 1.02
MOLF/EiJ f 8.55 1.57   8 0.555 0.184 6.91, 10.8 0.23
MOLF/EiJ m 8.44 1.46   7 0.552 0.173 6.49, 10.5 0.3
NOD/ShiLtJ f 12.3 2.65   12 0.764 0.215 7.31, 16.9 1.73
NOD/ShiLtJ m 13.7 2.15   12 0.62 0.157 10.8, 18.8 2.35
NZB/BlNJ f 6.9 1.43   6 0.582 0.207 4.29, 8.58 -0.43
NZB/BlNJ m 6.62 1.92   12 0.554 0.29 3.13, 10.5 -0.41
PERA/EiJ f 6.3 1.35   10 0.426 0.214 4.55, 8.63 -0.67
PERA/EiJ m 5.04 1.87   12 0.541 0.371 3.32, 10.3 -1.02
PL/J f 9.71 2.51   12 0.726 0.259 6.69, 15.6 0.69
PL/J m 8.47 1.46   7 0.553 0.173 6.55, 10.5 0.31
SJL/J f 7.48 0.95   8 0.336 0.127 5.81, 8.58 -0.2
SJL/J m 6.53 1.44   12 0.416 0.221 4.27, 8.75 -0.44
SM/J f 9.18 1.25   14 0.333 0.136 6.81, 11.0 0.48
SM/J m 7.05 3.05   10 0.963 0.432 1.0, 12.3 -0.24
SPRET/EiJ f 4.36 1.5   7 0.566 0.343 2.17, 6.87 -1.44
SPRET/EiJ m 6.4 1.41   2   1.0 0.221 5.4, 7.4 -0.49
SWR/J f 9.0 1.09   10 0.344 0.121 7.81, 11.5 0.41
SWR/J m 9.0 1.06   10 0.334 0.117 7.38, 10.6 0.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.293 0.6287 5.5294 3.0566
129S1/SvImJ m 3.819 0.6287 5.0554 2.5826
A/J f 3.2112 0.7029 4.5936 1.8289
A/J m 2.5156 0.6627 3.8188 1.2123
AKR/J f 8.671 0.6287 9.9074 7.4346
AKR/J m 8.4775 0.7029 9.8598 7.0952
BALB/cByJ f 8.295 0.6287 9.5314 7.0586
BALB/cByJ m 8.3 0.6287 9.5364 7.0636
BTBR T+ Itpr3tf/J f 9.0117 0.5739 10.1403 7.883
BTBR T+ Itpr3tf/J m 8.8683 0.8116 10.4645 7.2722
C3H/HeJ f 4.502 0.6287 5.7384 3.2656
C3H/HeJ m 4.2637 0.7029 5.6461 2.8814
C57BL/6J f 10.6388 0.7029 12.0211 9.2564
C57BL/6J m 8.691 0.6287 9.9274 7.4546
C57L/J f 10.248 0.6287 11.4844 9.0116
C57L/J m 10.525 0.7029 11.9073 9.1427
C58/J f 11.884 0.6287 13.1204 10.6476
C58/J m 10.383 0.6287 11.6194 9.1466
CAST/EiJ f 8.087 0.6287 9.3234 6.8506
CAST/EiJ m 7.6056 0.6627 8.9088 6.3023
DBA/2J f 5.69 0.6287 6.9264 4.4536
DBA/2J m 5.9975 0.7029 7.3798 4.6152
FVB/NJ f 9.177 0.6287 10.4134 7.9406
FVB/NJ m 10.3173 0.5994 11.4961 9.1384
MOLF/EiJ f 8.5537 0.7029 9.9361 7.1714
MOLF/EiJ m 8.4357 0.7514 9.9135 6.958
NOD/ShiLtJ f 12.3342 0.5739 13.4628 11.2055
NOD/ShiLtJ m 13.7 0.5739 14.8287 12.5713
NZB/BlNJ f 6.9017 0.8116 8.4978 5.3055
NZB/BlNJ m 6.6208 0.5739 7.7495 5.4922
PERA/EiJ f 6.304 0.6287 7.5404 5.0676
PERA/EiJ m 5.0433 0.5739 6.172 3.9147
PL/J f 9.71 0.5739 10.8387 8.5813
PL/J m 8.4714 0.7514 9.9492 6.9937
SJL/J f 7.4775 0.7029 8.8598 6.0952
SJL/J m 6.5275 0.5739 7.6562 5.3988
SM/J f 9.18 0.5313 10.2249 8.1351
SM/J m 7.051 0.6287 8.2874 5.8146
SPRET/EiJ f 4.3614 0.7514 5.8392 2.8837
SPRET/EiJ m 6.4 1.4057 9.1646 3.6354
SWR/J f 8.998 0.6287 10.2344 7.7616
SWR/J m 9.004 0.6287 10.2404 7.7676


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 4.056 0.4445 4.9303 3.1817
A/J both 2.8634 0.483 3.8133 1.9135
AKR/J both 8.5742 0.4715 9.5015 7.647
BALB/cByJ both 8.2975 0.4445 9.1718 7.4232
BTBR T+ Itpr3tf/J both 8.94 0.497 9.9174 7.9626
C3H/HeJ both 4.3829 0.4715 5.3102 3.4556
C57BL/6J both 9.6649 0.4715 10.5922 8.7376
C57L/J both 10.3865 0.4715 11.3138 9.4592
C58/J both 11.1335 0.4445 12.0078 10.2592
CAST/EiJ both 7.8463 0.4567 8.7445 6.9481
DBA/2J both 5.8437 0.4715 6.771 4.9165
FVB/NJ both 9.7471 0.4343 10.6013 8.893
MOLF/EiJ both 8.4947 0.5144 9.5065 7.483
NOD/ShiLtJ both 13.0171 0.4058 13.8152 12.219
NZB/BlNJ both 6.7612 0.497 7.7387 5.7838
PERA/EiJ both 5.6737 0.4256 6.5107 4.8366
PL/J both 9.0907 0.4727 10.0205 8.161
SJL/J both 7.0025 0.4537 7.8948 6.1102
SM/J both 8.1155 0.4116 8.9249 7.3061
SPRET/EiJ both 5.3807 0.797 6.9481 3.8133
SWR/J both 9.001 0.4445 9.8753 8.1267




  GWAS USING LINEAR MIXED MODELS