Project measure / variable:   Tordoff3   pct_fat

ID, description, units MPD:10331   pct_fat   percent fat, head excluded   [%]  
Data set, strains Tordoff3   inbred w/CC7   40 strains     sex: both     age: 14-18wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Tordoff3 - percent fat, head excluded



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested40 strains40 strains
Mean of the strain means22.9   % 26.0   %
Median of the strain means21.6   % 24.8   %
SD of the strain means± 5.20 ± 6.25
Coefficient of variation (CV)0.227 0.240
Min–max range of strain means16.7   –   43.5   % 16.4   –   43.0   %
Mean sample size per strain9.7   mice 9.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2150.0491 2150.0491 122.4038 < 0.0001
strain 39 21159.599 542.5538 30.888 < 0.0001
sex:strain 39 4684.2837 120.1098 6.8379 < 0.0001
Residuals 707 12418.605 17.5652


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 21.6 2.42   10 0.764 0.112 17.4, 24.5 -0.25
129S1/SvImJ m 25.5 2.91   9 0.968 0.114 19.3, 28.5 -0.08
A/J f 23.8 3.84   10 1.21 0.161 19.8, 32.8 0.18
A/J m 26.6 8.6   10 2.72 0.323 17.8, 48.3 0.1
AKR/J f 23.7 5.66   9 1.89 0.239 18.9, 36.2 0.16
AKR/J m 32.0 3.4   10 1.08 0.106 28.1, 38.1 0.96
BALB/cByJ f 19.5 1.99   9 0.664 0.102 16.7, 23.1 -0.65
BALB/cByJ m 23.2 2.79   10 0.881 0.12 18.1, 28.9 -0.45
BTBR T+ Itpr3tf/J f 20.0 1.92   10 0.608 0.0962 17.2, 23.6 -0.55
BTBR T+ Itpr3tf/J m 23.1 3.49   10 1.1 0.151 18.7, 29.0 -0.46
BUB/BnJ f 20.4 2.08   10 0.659 0.102 17.9, 23.7 -0.48
BUB/BnJ m 24.3 4.52   9 1.51 0.186 18.2, 31.1 -0.27
C3H/HeJ f 20.8 2.34   10 0.738 0.112 18.0, 24.2 -0.4
C3H/HeJ m 24.8 2.69   10 0.85 0.109 21.5, 28.8 -0.19
C57BL/10J f 19.7 1.79   10 0.565 0.0909 17.4, 23.0 -0.61
C57BL/10J m 26.4 3.53   10 1.11 0.133 19.8, 31.3 0.07
C57BL/6J f 22.0 9.58   9 3.19 0.435 16.1, 47.1 -0.17
C57BL/6J m 22.2 3.59   9 1.2 0.162 18.5, 28.4 -0.61
C57BLKS/J f 19.6 1.31   10 0.415 0.0669 17.6, 22.0 -0.63
C57BLKS/J m 23.8 2.88   8 1.02 0.121 19.9, 29.1 -0.35
C57BR/cdJ f 18.1 1.29   15 0.333 0.0712 15.9, 20.3 -0.92
C57BR/cdJ m 26.5 5.67   13 1.57 0.214 18.4, 34.9 0.08
C57L/J f 17.4 1.66   10 0.525 0.0951 14.4, 20.4 -1.05
C57L/J m 22.9 3.89   10 1.23 0.17 17.1, 28.2 -0.5
C58/J f 16.7 1.61   9 0.535 0.096 15.0, 19.4 -1.19
C58/J m 16.4 1.68   9 0.561 0.102 14.5, 18.8 -1.54
CAST/EiJ f 20.3 1.52   10 0.481 0.0748 18.6, 23.0 -0.5
CAST/EiJ m 19.3 2.33   10 0.737 0.121 15.3, 23.8 -1.07
CBA/J f 24.1 4.56   10 1.44 0.189 16.4, 30.2 0.23
CBA/J m 33.7 2.89   10 0.913 0.0856 30.4, 39.7 1.23
CE/J f 23.4 2.47   9 0.823 0.106 21.0, 27.5 0.1
CE/J m 25.6 1.24   8 0.439 0.0484 24.4, 27.6 -0.06
CZECHII/EiJ f 19.7 1.97   9 0.656 0.0996 17.6, 24.0 -0.61
CZECHII/EiJ m 16.8 1.04   10 0.33 0.0623 15.7, 18.8 -1.47
DBA/2J f 21.1 1.9   10 0.601 0.0899 18.9, 24.3 -0.34
DBA/2J m 30.2 6.35   10 2.01 0.21 23.4, 45.0 0.67
FVB/NJ f 23.9 9.39   10 2.97 0.394 18.2, 50.0 0.2
FVB/NJ m 22.5 2.08   10 0.656 0.0923 19.0, 25.6 -0.56
I/LnJ f 17.6 2.04   10 0.644 0.116 16.0, 22.5 -1.01
I/LnJ m 19.1 4.56   10 1.44 0.239 14.9, 29.0 -1.1
JF1/MsJ f 26.2 6.8   10 2.15 0.259 19.4, 41.8 0.64
JF1/MsJ m 43.0 9.39   10 2.97 0.218 25.4, 50.5 2.72
KK/HlJ f 43.5 2.42   10 0.764 0.0556 40.6, 46.8 3.96
KK/HlJ m 32.7 5.45   10 1.72 0.167 17.8, 35.6 1.07
LP/J f 22.6 2.24   10 0.708 0.0993 19.4, 26.2 -0.05
LP/J m 31.0 4.32   10 1.37 0.139 25.3, 38.9 0.8
MA/MyJ f 26.2 4.01   8 1.42 0.153 20.9, 33.0 0.64
MA/MyJ m 33.6 3.35   15 0.866 0.0997 28.5, 40.1 1.22
MOLF/EiJ f 21.9 1.59   9 0.531 0.0727 19.3, 24.0 -0.19
MOLF/EiJ m 19.3 1.6   10 0.507 0.0829 15.9, 21.1 -1.07
MSM/MsJ f 19.3 1.26   10 0.399 0.0653 17.3, 20.5 -0.69
MSM/MsJ m 20.3 2.49   10 0.787 0.123 16.4, 24.2 -0.91
NOD/ShiLtJ f 21.4 3.5   8 1.24 0.164 15.8, 27.0 -0.28
NOD/ShiLtJ m 23.2 3.16   10 0.998 0.136 19.2, 28.3 -0.45
NON/ShiLtJ f 34.6 6.27   10 1.98 0.181 26.5, 45.1 2.25
NON/ShiLtJ m 42.9 1.75   10 0.554 0.0409 39.9, 45.1 2.71
NZB/BlNJ f 27.0 4.41   10 1.4 0.163 19.6, 33.9 0.79
NZB/BlNJ m 24.8 5.71   10 1.81 0.23 16.5, 31.9 -0.19
NZW/LacJ f 28.8 4.01   10 1.27 0.139 23.7, 34.0 1.14
NZW/LacJ m 24.0 3.18   10 1.01 0.132 20.2, 29.7 -0.32
PERA/EiJ f 33.4 5.22   10 1.65 0.157 26.0, 39.8 2.02
PERA/EiJ m 32.3 6.48   10 2.05 0.201 26.2, 49.8 1.01
PL/J f 24.3 2.11   10 0.666 0.0867 21.5, 28.3 0.27
PL/J m 33.4 6.05   10 1.91 0.181 28.5, 49.3 1.19
PWK/PhJ f 22.2 3.24   10 1.02 0.146 16.5, 27.2 -0.13
PWK/PhJ m 21.8 2.08   10 0.659 0.0956 18.9, 24.9 -0.67
RIIIS/J f 27.2 5.86   10 1.85 0.215 21.5, 36.9 0.83
RIIIS/J m 31.3 4.7   10 1.49 0.15 23.0, 36.3 0.85
SEA/GnJ f 21.3 1.54   10 0.488 0.0724 18.2, 24.1 -0.3
SEA/GnJ m 27.3 4.32   10 1.37 0.158 18.8, 35.5 0.21
SJL/J f 21.5 4.29   10 1.36 0.199 16.8, 31.5 -0.27
SJL/J m 25.4 8.63   10 2.73 0.34 18.8, 47.3 -0.09
SM/J f 19.9 2.08   10 0.657 0.104 16.9, 22.9 -0.57
SM/J m 24.8 8.62   10 2.73 0.348 17.5, 47.2 -0.19
SPRET/EiJ f 25.3 2.32   9 0.775 0.0917 22.1, 28.6 0.47
SPRET/EiJ m 28.1 3.62   5 1.62 0.129 23.4, 32.1 0.34
SWR/J f 17.7 3.44   10 1.09 0.194 14.5, 25.6 -1.0
SWR/J m 17.0 1.31   9 0.438 0.077 15.0, 18.7 -1.44
WSB/EiJ f 17.5 1.69   10 0.533 0.0964 14.9, 21.5 -1.03
WSB/EiJ m 18.6 1.89   10 0.597 0.102 16.1, 21.7 -1.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 21.62 1.3253 24.2221 19.0179
129S1/SvImJ m 25.5111 1.397 28.2539 22.7683
A/J f 23.79 1.3253 26.3921 21.1879
A/J m 26.65 1.3253 29.2521 24.0479
AKR/J f 23.6778 1.397 26.4206 20.935
AKR/J m 32.0 1.3253 34.6021 29.3979
BALB/cByJ f 19.5 1.397 22.2428 16.7572
BALB/cByJ m 23.23 1.3253 25.8321 20.6279
BTBR T+ Itpr3tf/J f 20.0 1.3253 22.6021 17.3979
BTBR T+ Itpr3tf/J m 23.08 1.3253 25.6821 20.4779
BUB/BnJ f 20.4 1.3253 23.0021 17.7979
BUB/BnJ m 24.3222 1.397 27.065 21.5794
C3H/HeJ f 20.82 1.3253 23.4221 18.2179
C3H/HeJ m 24.75 1.3253 27.3521 22.1479
C57BL/10J f 19.66 1.3253 22.2621 17.0579
C57BL/10J m 26.44 1.3253 29.0421 23.8379
C57BL/6J f 22.0111 1.397 24.7539 19.2683
C57BL/6J m 22.1667 1.397 24.9095 19.4238
C57BLKS/J f 19.64 1.3253 22.2421 17.0379
C57BLKS/J m 23.8 1.4818 26.7092 20.8908
C57BR/cdJ f 18.1267 1.0821 20.2512 16.0021
C57BR/cdJ m 26.5077 1.1624 28.7899 24.2255
C57L/J f 17.45 1.3253 20.0521 14.8479
C57L/J m 22.89 1.3253 25.4921 20.2879
C58/J f 16.7222 1.397 19.465 13.9794
C58/J m 16.4222 1.397 19.165 13.6794
CAST/EiJ f 20.32 1.3253 22.9221 17.7179
CAST/EiJ m 19.34 1.3253 21.9421 16.7379
CBA/J f 24.08 1.3253 26.6821 21.4779
CBA/J m 33.75 1.3253 36.3521 31.1479
CE/J f 23.3556 1.397 26.0984 20.6127
CE/J m 25.6375 1.4818 28.5467 22.7283
CZECHII/EiJ f 19.7444 1.397 22.4873 17.0016
CZECHII/EiJ m 16.75 1.3253 19.3521 14.1479
DBA/2J f 21.15 1.3253 23.7521 18.5479
DBA/2J m 30.21 1.3253 32.8121 27.6079
FVB/NJ f 23.85 1.3253 26.4521 21.2479
FVB/NJ m 22.5 1.3253 25.1021 19.8979
I/LnJ f 17.55 1.3253 20.1521 14.9479
I/LnJ m 19.13 1.3253 21.7321 16.5279
JF1/MsJ f 26.23 1.3253 28.8321 23.6279
JF1/MsJ m 43.05 1.3253 45.6521 40.4479
KK/HlJ f 43.46 1.3253 46.0621 40.8579
KK/HlJ m 32.67 1.3253 35.2721 30.0679
LP/J f 22.55 1.3253 25.1521 19.9479
LP/J m 30.96 1.3253 33.5621 28.3579
MA/MyJ f 26.225 1.4818 29.1342 23.3158
MA/MyJ m 33.64 1.0821 35.7646 31.5154
MOLF/EiJ f 21.9333 1.397 24.6762 19.1905
MOLF/EiJ m 19.34 1.3253 21.9421 16.7379
MSM/MsJ f 19.33 1.3253 21.9321 16.7279
MSM/MsJ m 20.27 1.3253 22.8721 17.6679
NOD/ShiLtJ f 21.3625 1.4818 24.2717 18.4533
NOD/ShiLtJ m 23.23 1.3253 25.8321 20.6279
NON/ShiLtJ f 34.62 1.3253 37.2221 32.0179
NON/ShiLtJ m 42.9 1.3253 45.5021 40.2979
NZB/BlNJ f 27.01 1.3253 29.6121 24.4079
NZB/BlNJ m 24.83 1.3253 27.4321 22.2279
NZW/LacJ f 28.83 1.3253 31.4321 26.2279
NZW/LacJ m 24.03 1.3253 26.6321 21.4279
PERA/EiJ f 33.36 1.3253 35.9621 30.7579
PERA/EiJ m 32.32 1.3253 34.9221 29.7179
PL/J f 24.28 1.3253 26.8821 21.6779
PL/J m 33.37 1.3253 35.9721 30.7679
PWK/PhJ f 22.2 1.3253 24.8021 19.5979
PWK/PhJ m 21.81 1.3253 24.4121 19.2079
RIIIS/J f 27.25 1.3253 29.8521 24.6479
RIIIS/J m 31.26 1.3253 33.8621 28.6579
SEA/GnJ f 21.3 1.3253 23.9021 18.6979
SEA/GnJ m 27.34 1.3253 29.9421 24.7379
SJL/J f 21.52 1.3253 24.1221 18.9179
SJL/J m 25.39 1.3253 27.9921 22.7879
SM/J f 19.9 1.3253 22.5021 17.2979
SM/J m 24.75 1.3253 27.3521 22.1479
SPRET/EiJ f 25.3444 1.397 28.0873 22.6016
SPRET/EiJ m 28.14 1.8743 31.8199 24.4601
SWR/J f 17.74 1.3253 20.3421 15.1379
SWR/J m 17.0444 1.397 19.7873 14.3016
WSB/EiJ f 17.5 1.3253 20.1021 14.8979
WSB/EiJ m 18.56 1.3253 21.1621 15.9579


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 23.5656 0.9628 25.4559 21.6752
A/J both 25.22 0.9372 27.0599 23.3801
AKR/J both 27.8389 0.9628 29.7292 25.9485
BALB/cByJ both 21.365 0.9628 23.2554 19.4746
BTBR T+ Itpr3tf/J both 21.54 0.9372 23.3799 19.7001
BUB/BnJ both 22.3611 0.9628 24.2515 20.4708
C3H/HeJ both 22.785 0.9372 24.6249 20.9451
C57BL/10J both 23.05 0.9372 24.8899 21.2101
C57BL/6J both 22.0889 0.9878 24.0284 20.1494
C57BLKS/J both 21.72 0.994 23.6716 19.7684
C57BR/cdJ both 22.3172 0.7941 23.8762 20.7582
C57L/J both 20.17 0.9372 22.0099 18.3301
C58/J both 16.5722 0.9878 18.5117 14.6328
CAST/EiJ both 19.83 0.9372 21.6699 17.9901
CBA/J both 28.915 0.9372 30.7549 27.0751
CE/J both 24.4965 1.0183 26.4957 22.4974
CZECHII/EiJ both 18.2472 0.9628 20.1376 16.3569
DBA/2J both 25.68 0.9372 27.5199 23.8401
FVB/NJ both 23.175 0.9372 25.0149 21.3351
I/LnJ both 18.34 0.9372 20.1799 16.5001
JF1/MsJ both 34.64 0.9372 36.4799 32.8001
KK/HlJ both 38.065 0.9372 39.9049 36.2251
LP/J both 26.755 0.9372 28.5949 24.9151
MA/MyJ both 29.9325 0.9174 31.7337 28.1313
MOLF/EiJ both 20.6367 0.9628 22.527 18.7463
MSM/MsJ both 19.8 0.9372 21.6399 17.9601
NOD/ShiLtJ both 22.2962 0.994 24.2478 20.3447
NON/ShiLtJ both 38.76 0.9372 40.5999 36.9201
NZB/BlNJ both 25.92 0.9372 27.7599 24.0801
NZW/LacJ both 26.43 0.9372 28.2699 24.5901
PERA/EiJ both 32.84 0.9372 34.6799 31.0001
PL/J both 28.825 0.9372 30.6649 26.9851
PWK/PhJ both 22.005 0.9372 23.8449 20.1651
RIIIS/J both 29.255 0.9372 31.0949 27.4151
SEA/GnJ both 24.32 0.9372 26.1599 22.4801
SJL/J both 23.455 0.9372 25.2949 21.6151
SM/J both 22.325 0.9372 24.1649 20.4851
SPRET/EiJ both 26.7422 1.1688 29.037 24.4474
SWR/J both 17.3922 0.9628 19.2826 15.5019
WSB/EiJ both 18.03 0.9372 19.8699 16.1901




  GWAS USING LINEAR MIXED MODELS