Project measure / variable:   Tordoff3   CaCl2_pref25

ID, description, units MPD:10309   CaCl2_pref25   preference for CaCl2 (calcium chloride) solutions   [%]  concentration 25 mM  
Data set, strains Tordoff3   inbred w/CC7   40 strains     sex: both     age: 9-11wks
Procedure bottle choice test
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  STRAIN COMPARISON PLOT
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Tordoff3 - preference for CaCl2 (calcium chloride) solutions concentration 25 mM



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested40 strains40 strains
Mean of the strain means40.3   % 36.9   %
Median of the strain means38.6   % 34.9   %
SD of the strain means± 16.5 ± 18.0
Coefficient of variation (CV)0.411 0.487
Min–max range of strain means8.60   –   75.5   % 7.94   –   86.4   %
Mean sample size per strain9.8   mice 9.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1150.6605 1150.6605 4.4597 0.0351
strain 39 205925.7074 5280.1463 20.4645 < 0.0001
sex:strain 39 22038.9856 565.1022 2.1902 0.0001
Residuals 710 183190.8744 258.0153


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 44.5 21.1   10 6.68 0.475 9.6, 69.2 0.26
129S1/SvImJ m 42.7 21.4   9 7.12 0.5 8.7, 75.7 0.32
A/J f 39.8 10.9   10 3.45 0.274 22.5, 59.3 -0.03
A/J m 50.2 17.8   10 5.62 0.354 12.2, 75.6 0.74
AKR/J f 28.1 12.3   9 4.1 0.437 12.5, 45.2 -0.74
AKR/J m 41.5 16.8   10 5.32 0.405 2.8, 64.2 0.25
BALB/cByJ f 55.2 11.9   9 3.95 0.215 39.5, 70.2 0.9
BALB/cByJ m 39.7 16.7   10 5.28 0.421 15.6, 62.2 0.15
BTBR T+ Itpr3tf/J f 70.1 14.8   10 4.69 0.212 47.9, 87.6 1.8
BTBR T+ Itpr3tf/J m 68.6 8.27   10 2.62 0.121 55.1, 81.7 1.76
BUB/BnJ f 46.7 16.7   10 5.29 0.359 29.8, 75.0 0.39
BUB/BnJ m 31.4 17.0   9 5.67 0.541 8.1, 61.5 -0.31
C3H/HeJ f 54.5 24.9   10 7.87 0.457 19.6, 82.9 0.86
C3H/HeJ m 53.1 20.2   10 6.38 0.38 21.8, 82.2 0.9
C57BL/10J f 26.4 12.7   10 4.03 0.483 9.1, 54.5 -0.84
C57BL/10J m 17.0 8.65   10 2.74 0.508 6.9, 33.3 -1.11
C57BL/6J f 33.1 7.33   9 2.44 0.222 20.4, 44.6 -0.43
C57BL/6J m 27.1 11.9   9 3.98 0.442 9.2, 43.1 -0.55
C57BLKS/J f 45.6 3.92   10 1.24 0.0858 40.7, 52.3 0.32
C57BLKS/J m 41.7 8.69   8 3.07 0.208 29.6, 57.4 0.26
C57BR/cdJ f 21.4 11.6   15 2.99 0.541 7.1, 39.2 -1.14
C57BR/cdJ m 20.4 11.7   13 3.24 0.571 5.9, 40.0 -0.92
C57L/J f 34.0 13.7   10 4.33 0.402 17.6, 52.4 -0.38
C57L/J m 40.7 14.9   10 4.7 0.365 12.6, 58.8 0.21
C58/J f 8.6 5.91   9 1.97 0.688 3.2, 22.6 -1.91
C58/J m 7.94 3.51   9 1.17 0.442 3.4, 13.2 -1.61
CAST/EiJ f 35.1 14.7   11 4.43 0.418 15.0, 58.3 -0.31
CAST/EiJ m 45.7 19.7   10 6.22 0.43 17.4, 74.2 0.49
CBA/J f 56.6 16.1   10 5.08 0.284 28.1, 89.2 0.99
CBA/J m 35.1 24.5   10 7.76 0.698 9.4, 83.6 -0.1
CE/J f 11.5 7.98   9 2.66 0.694 3.0, 25.6 -1.74
CE/J m 11.3 7.09   8 2.51 0.627 3.8, 27.1 -1.42
CZECHII/EiJ f 52.7 27.5   9 9.15 0.521 18.5, 87.5 0.75
CZECHII/EiJ m 57.3 26.9   10 8.51 0.469 10.3, 88.7 1.13
DBA/2J f 33.2 17.6   10 5.56 0.529 8.8, 56.1 -0.43
DBA/2J m 51.8 18.2   10 5.75 0.352 30.0, 84.9 0.82
FVB/NJ f 37.4 23.8   10 7.53 0.637 7.2, 69.6 -0.17
FVB/NJ m 17.5 9.02   10 2.85 0.514 5.0, 35.3 -1.08
I/LnJ f 20.1 7.62   10 2.41 0.38 10.3, 32.4 -1.22
I/LnJ m 23.5 7.12   10 2.25 0.303 10.3, 33.8 -0.75
JF1/MsJ f 62.6 14.8   10 4.68 0.237 43.2, 86.8 1.35
JF1/MsJ m 76.3 10.0   10 3.18 0.132 58.3, 88.4 2.19
KK/HlJ f 14.7 8.59   10 2.72 0.585 5.5, 26.4 -1.55
KK/HlJ m 9.52 10.4   10 3.28 1.09 2.2, 37.9 -1.52
LP/J f 47.7 25.5   10 8.05 0.533 16.1, 85.0 0.45
LP/J m 49.3 21.8   10 6.88 0.442 15.5, 87.0 0.69
MA/MyJ f 74.1 12.0   8 4.25 0.162 54.1, 88.4 2.05
MA/MyJ m 55.7 19.4   15 5.02 0.349 15.4, 88.1 1.04
MOLF/EiJ f 60.8 18.2   9 6.07 0.3 44.8, 90.5 1.24
MOLF/EiJ m 55.2 13.6   10 4.29 0.246 25.0, 71.8 1.01
MSM/MsJ f 50.0 22.0   10 6.96 0.44 15.9, 80.8 0.59
MSM/MsJ m 50.9 25.2   10 7.97 0.495 7.0, 91.5 0.77
NOD/ShiLtJ f 26.9 17.0   10 5.36 0.631 5.7, 53.3 -0.81
NOD/ShiLtJ m 22.3 10.5   10 3.34 0.473 10.0, 42.4 -0.81
NON/ShiLtJ f 40.9 10.8   10 3.41 0.264 15.5, 52.8 0.04
NON/ShiLtJ m 39.0 14.2   10 4.49 0.364 13.5, 62.0 0.11
NZB/BlNJ f 49.4 6.2   10 1.96 0.125 40.9, 61.1 0.55
NZB/BlNJ m 45.0 9.42   10 2.98 0.209 33.9, 62.2 0.45
NZW/LacJ f 26.8 12.7   10 4.01 0.473 10.1, 47.5 -0.81
NZW/LacJ m 21.4 12.6   10 3.99 0.588 4.6, 38.9 -0.86
PERA/EiJ f 50.2 26.4   10 8.35 0.526 19.4, 86.5 0.6
PERA/EiJ m 18.0 9.3   10 2.94 0.515 10.2, 40.0 -1.05
PL/J f 21.6 14.1   10 4.47 0.656 4.3, 44.3 -1.13
PL/J m 25.3 15.1   10 4.76 0.594 5.7, 58.8 -0.65
PWK/PhJ f 75.5 16.5   10 5.21 0.218 43.1, 90.9 2.13
PWK/PhJ m 86.4 3.17   10 1.0 0.0367 81.7, 90.5 2.75
RIIIS/J f 50.3 16.3   10 5.16 0.324 19.6, 70.5 0.61
RIIIS/J m 32.8 15.4   10 4.86 0.468 14.3, 64.2 -0.23
SEA/GnJ f 32.4 13.3   10 4.2 0.41 15.6, 53.9 -0.48
SEA/GnJ m 31.7 10.9   10 3.44 0.343 17.4, 50.6 -0.29
SJL/J f 26.4 12.9   10 4.09 0.49 10.3, 52.7 -0.84
SJL/J m 23.6 12.2   10 3.85 0.517 6.8, 42.5 -0.74
SM/J f 51.4 21.6   10 6.82 0.42 7.2, 79.6 0.67
SM/J m 34.7 29.1   10 9.21 0.84 4.3, 84.5 -0.12
SPRET/EiJ f 29.2 20.7   9 6.9 0.71 12.5, 76.3 -0.67
SPRET/EiJ m 19.1 7.58   5 3.39 0.398 12.0, 31.0 -0.99
SWR/J f 30.8 17.4   10 5.49 0.564 8.1, 60.9 -0.57
SWR/J m 23.3 12.8   9 4.25 0.547 4.8, 45.6 -0.76
WSB/EiJ f 34.1 15.9   10 5.04 0.468 8.8, 59.6 -0.37
WSB/EiJ m 34.0 24.1   10 7.62 0.709 3.1, 68.6 -0.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 44.48 5.0795 54.4527 34.5073
129S1/SvImJ m 42.7 5.3543 53.2121 32.1879
A/J f 39.8 5.0795 49.7727 29.8273
A/J m 50.25 5.0795 60.2227 40.2773
AKR/J f 28.1333 5.3543 38.6455 17.6212
AKR/J m 41.51 5.0795 51.4827 31.5373
BALB/cByJ f 55.2333 5.3543 65.7455 44.7212
BALB/cByJ m 39.66 5.0795 49.6327 29.6873
BTBR T+ Itpr3tf/J f 70.06 5.0795 80.0327 60.0873
BTBR T+ Itpr3tf/J m 68.62 5.0795 78.5927 58.6473
BUB/BnJ f 46.66 5.0795 56.6327 36.6873
BUB/BnJ m 31.4111 5.3543 41.9232 20.899
C3H/HeJ f 54.48 5.0795 64.4527 44.5073
C3H/HeJ m 53.14 5.0795 63.1127 43.1673
C57BL/10J f 26.35 5.0795 36.3227 16.3773
C57BL/10J m 17.03 5.0795 27.0027 7.0573
C57BL/6J f 33.0889 5.3543 43.601 22.5768
C57BL/6J m 27.0556 5.3543 37.5677 16.5434
C57BLKS/J f 45.65 5.0795 55.6227 35.6773
C57BLKS/J m 41.725 5.6791 52.8748 30.5752
C57BR/cdJ f 21.4 4.1474 29.5427 13.2573
C57BR/cdJ m 20.4462 4.455 29.1928 11.6995
C57L/J f 34.03 5.0795 44.0027 24.0573
C57L/J m 40.71 5.0795 50.6827 30.7373
C58/J f 8.6 5.3543 19.1121 0.0
C58/J m 7.9444 5.3543 18.4566 0.0
CAST/EiJ f 35.1364 4.8431 44.6449 25.6278
CAST/EiJ m 45.69 5.0795 55.6627 35.7173
CBA/J f 56.63 5.0795 66.6027 46.6573
CBA/J m 35.15 5.0795 45.1227 25.1773
CE/J f 11.5 5.3543 22.0121 0.9879
CE/J m 11.3125 5.6791 22.4623 0.1627
CZECHII/EiJ f 52.6556 5.3543 63.1677 42.1434
CZECHII/EiJ m 57.31 5.0795 67.2827 47.3373
DBA/2J f 33.19 5.0795 43.1627 23.2173
DBA/2J m 51.75 5.0795 61.7227 41.7773
FVB/NJ f 37.41 5.0795 47.3827 27.4373
FVB/NJ m 17.54 5.0795 27.5127 7.5673
I/LnJ f 20.05 5.0795 30.0227 10.0773
I/LnJ m 23.48 5.0795 33.4527 13.5073
JF1/MsJ f 62.61 5.0795 72.5827 52.6373
JF1/MsJ m 76.32 5.0795 86.2927 66.3473
KK/HlJ f 14.68 5.0795 24.6527 4.7073
KK/HlJ m 9.52 5.0795 19.4927 0.0
LP/J f 47.73 5.0795 57.7027 37.7573
LP/J m 49.27 5.0795 59.2427 39.2973
MA/MyJ f 74.125 5.6791 85.2748 62.9752
MA/MyJ m 55.6867 4.1474 63.8293 47.544
MOLF/EiJ f 60.8111 5.3543 71.3232 50.299
MOLF/EiJ m 55.21 5.0795 65.1827 45.2373
MSM/MsJ f 50.02 5.0795 59.9927 40.0473
MSM/MsJ m 50.89 5.0795 60.8627 40.9173
NOD/ShiLtJ f 26.87 5.0795 36.8427 16.8973
NOD/ShiLtJ m 22.3 5.0795 32.2727 12.3273
NON/ShiLtJ f 40.88 5.0795 50.8527 30.9073
NON/ShiLtJ m 39.0 5.0795 48.9727 29.0273
NZB/BlNJ f 49.44 5.0795 59.4127 39.4673
NZB/BlNJ m 45.02 5.0795 54.9927 35.0473
NZW/LacJ f 26.8 5.0795 36.7727 16.8273
NZW/LacJ m 21.45 5.0795 31.4227 11.4773
PERA/EiJ f 50.2 5.0795 60.1727 40.2273
PERA/EiJ m 18.05 5.0795 28.0227 8.0773
PL/J f 21.58 5.0795 31.5527 11.6073
PL/J m 25.34 5.0795 35.3127 15.3673
PWK/PhJ f 75.49 5.0795 85.4627 65.5173
PWK/PhJ m 86.4 5.0795 96.3727 76.4273
RIIIS/J f 50.28 5.0795 60.2527 40.3073
RIIIS/J m 32.82 5.0795 42.7927 22.8473
SEA/GnJ f 32.43 5.0795 42.4027 22.4573
SEA/GnJ m 31.68 5.0795 41.6527 21.7073
SJL/J f 26.4 5.0795 36.3727 16.4273
SJL/J m 23.55 5.0795 33.5227 13.5773
SM/J f 51.35 5.0795 61.3227 41.3773
SM/J m 34.67 5.0795 44.6427 24.6973
SPRET/EiJ f 29.1556 5.3543 39.6677 18.6434
SPRET/EiJ m 19.06 7.1835 33.1635 4.9565
SWR/J f 30.78 5.0795 40.7527 20.8073
SWR/J m 23.3333 5.3543 33.8455 12.8212
WSB/EiJ f 34.07 5.0795 44.0427 24.0973
WSB/EiJ m 34.02 5.0795 43.9927 24.0473


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 43.59 3.6902 50.835 36.345
A/J both 45.025 3.5918 52.0767 37.9733
AKR/J both 34.8217 3.6902 42.0666 27.5767
BALB/cByJ both 47.4467 3.6902 54.6916 40.2017
BTBR T+ Itpr3tf/J both 69.34 3.5918 76.3917 62.2883
BUB/BnJ both 39.0356 3.6902 46.2805 31.7906
C3H/HeJ both 53.81 3.5918 60.8617 46.7583
C57BL/10J both 21.69 3.5918 28.7417 14.6383
C57BL/6J both 30.0722 3.7861 37.5054 22.639
C57BLKS/J both 43.6875 3.8096 51.167 36.208
C57BR/cdJ both 20.9231 3.0434 26.8982 14.948
C57L/J both 37.37 3.5918 44.4217 30.3183
C58/J both 8.2722 3.7861 15.7054 0.839
CAST/EiJ both 40.4132 3.5092 47.3028 33.5236
CBA/J both 45.89 3.5918 52.9417 38.8383
CE/J both 11.4062 3.9026 19.0682 3.7443
CZECHII/EiJ both 54.9828 3.6902 62.2278 47.7378
DBA/2J both 42.47 3.5918 49.5217 35.4183
FVB/NJ both 27.475 3.5918 34.5267 20.4233
I/LnJ both 21.765 3.5918 28.8167 14.7133
JF1/MsJ both 69.465 3.5918 76.5167 62.4133
KK/HlJ both 12.1 3.5918 19.1517 5.0483
LP/J both 48.5 3.5918 55.5517 41.4483
MA/MyJ both 64.9058 3.5161 71.8091 58.0026
MOLF/EiJ both 58.0106 3.6902 65.2555 50.7656
MSM/MsJ both 50.455 3.5918 57.5067 43.4033
NOD/ShiLtJ both 24.585 3.5918 31.6367 17.5333
NON/ShiLtJ both 39.94 3.5918 46.9917 32.8883
NZB/BlNJ both 47.23 3.5918 54.2817 40.1783
NZW/LacJ both 24.125 3.5918 31.1767 17.0733
PERA/EiJ both 34.125 3.5918 41.1767 27.0733
PL/J both 23.46 3.5918 30.5117 16.4083
PWK/PhJ both 80.945 3.5918 87.9967 73.8933
RIIIS/J both 41.55 3.5918 48.6017 34.4983
SEA/GnJ both 32.055 3.5918 39.1067 25.0033
SJL/J both 24.975 3.5918 32.0267 17.9233
SM/J both 43.01 3.5918 50.0617 35.9583
SPRET/EiJ both 24.1078 4.4797 32.9029 15.3127
SWR/J both 27.0567 3.6902 34.3016 19.8117
WSB/EiJ both 34.045 3.5918 41.0967 26.9933




  GWAS USING LINEAR MIXED MODELS