MPD: Data set: Kumar3

Kumar3: Grooming behavior and locomotor activity in 51 inbred strains of mice and 11 F1 hybrid lines (2021)

Kumar V With: Geuther BQ, Peer A, He Hao, Sabnis G, Philip VM

Kumar3 downloads
• Download Kumar3 project data set animal data, as uploaded
• Download Kumar3 animal data matrix with factor-related expansion applied as necessary
• Download Kumar3 strain means, SD, N, etc. one row per strain/sex/measure

Ontology terms mapped to Kumar3 measures:

MP:0001259 abnormal body weight
MP:0001362 abnormal anxiety-related response
MP:0001392 abnormal locomotor behavior
MP:0001440 abnormal grooming behavior
VT:0001259 body mass
VT:0001392 locomotor behavior trait
VT:0001440 grooming behavior trait
VT:0010716 anxiety-related behavior trait

Investigators	Vivek Kumar The Jackson Laboratory, Bar Harbor, ME
Participants	Geuther BQ, Peer A, He Hao, Sabnis G, Philip VM
Contact	Vivek Kumar vivek.kumar@jax.org Lab web site
Acknowledgements	This work used the National Science Foundation (NSF) Extreme Science and Engineering Discovery Environment (XSEDE) XStream service at Stanford University through allocation TG-DBS170004
Funding Provided By	NIH DA041668, DA048634; The Jackson Laboratory Directors Innovation Fund; Brain and Behavioral Foundation Young Investigator Award
Project type	Phenotype strain survey data set
MPD identifiers	Kumar3 MPD:1051
Data changelog	No updates/corrections. Initial release date: 04/2021.
Formatted citation	Click above to copy-paste the entire citation for this MPD web page.

Experimental groups in this study:
• Baseline

Procedures conducted:

• body weight
• open field test		Locomotor activity and grooming behavior.

Mice: inbred w/CC8 62 strains ♀♂ age 8-14wks 1 experimental group

Sort/ Pick	Data set	Procedure / Protocol	Treatment	Phenotype Measure / Variable (click to view)	Panel	No. of Strains	Sex	Age	Sample Size (Avg)
Kumar3:4	Kumar3	body weight	(none)	body weight [g] Weight 112912	inbred w/CC8	62	both	8-14wks	N=19

Kumar3:10	Kumar3	open field test	(none)	distance traveled in first 5 min [cm] OFDistTraveled5m 112918	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:11	Kumar3	open field test	(none)	distance traveled in first 20 min [cm] OFDistTraveled20m 112919	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:12	Kumar3	open field test	(none)	distance traveled in first 55 min [cm] OFDistTraveled55m 112920	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:13	Kumar3	open field test	(none)	time spent in periphery first 5 min [s] OFPeripheryTime5m 112921	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:14	Kumar3	open field test	(none)	time spent in periphery first 20 min [s] OFPeripheryTime20m 112922	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:15	Kumar3	open field test	(none)	time spent in periphery first 55 min [s] OFPeripheryTime55m 112923	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:16	Kumar3	open field test	(none)	time spent in corners first 5 min [s] OFCornerTime5m 112924	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:17	Kumar3	open field test	(none)	time spent in corners first 20 min [s] OFCornerTime20m 112925	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:18	Kumar3	open field test	(none)	time spent in corners first 55 min [s] OFCornerTime55m 112926	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:19	Kumar3	open field test	(none)	time spent grooming first 5 min [s] GrTime5m 112927	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:20	Kumar3	open field test	(none)	time spent grooming first 20 min [s] GrTime20m 112928	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:21	Kumar3	open field test	(none)	time spent grooming first 55 min [s] GrTime55m 112929	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:22	Kumar3	open field test	(none)	time spent grooming in first 55 min divided by 55 [] GrTimeSlope55m 112930	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:23	Kumar3	open field test	(none)	number of grooming events in first 5 min [n] GrBoutNum5m 112931	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:24	Kumar3	open field test	(none)	number of grooming events in first 20 min [n] GrBoutNum20m 112932	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:25	Kumar3	open field test	(none)	number of grooming events in first 55 min [n] GrBoutNum55m 112933	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:26	Kumar3	open field test	(none)	number of grooming events first 55 min divided by 55 [n/min] GrBoutNumSlope55m 112934	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:27	Kumar3	open field test	(none)	duration of grooming events first 5 min (s per event) [s/n] GrBoutLength5m 112935	inbred w/CC8	62	both	8-14wks	N=15

Kumar3:28	Kumar3	open field test	(none)	duration of grooming events first 20 min (s per event) [s/n] GrBoutLength20m 112936	inbred w/CC8	62	both	8-14wks	N=19

Kumar3:29	Kumar3	open field test	(none)	duration of grooming events first 55 min (s per event) [s/n] GrBoutLength55m 112937	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:30	Kumar3	open field test	(none)	average duration of grooming events first 55 min divided by 55 GrBoutLengthSlope55m 113846	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:31	Kumar3	open field test	(none)	time when animal grooms most during 55 min test [min] GrPeakMidBin 113847	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:32	Kumar3	open field test	(none)	amount of time spent grooming when animal grooms most (in 5 min range) [s] GrPeakVal 113848	inbred w/CC8	62	both	8-14wks	N=20

Kumar3:33	Kumar3	open field test	(none)	amount of time spent grooming when animal grooms most divided by time when animal grooms most during first 55 min GrPeakSlope 113849	inbred w/CC8	62	both	8-14wks	N=20