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HMDPpheno4 supplemental data

Fear conditioning in males of 94 strains of mice in the Hybrid Mouse Diversity Panel (HMDP)   (2011)

Park CC, Gale GD, Lusis AJ, Smith DJ
With: Khan AH, de Jong S, Ghazalpour A, Bennett BJ, Farber CR, Langfelder P, Lin A, Eskin E, Horvath S, Ophoff RA


HMDPpheno4_suppdata

Supplementary Data

Test Day Test Endpoint var_name Class MPD description Units
1 training thigmotaxis ftr_pre_thig mean fear training pre-stimulus thigmotaxis, percent time spent near chamber walls, day 1 %
1 training thigmotaxis ftr_post_thig mean fear training post-stimulus thigmotaxis, percent time spent near chamber walls, day 1 %
1 training thigmotaxis ftr_pre_dtp mean    
1 training thigmotaxis ftr_post_dtp mean    
1 training thigmotaxis ftr_pre_dtpsd sd    
1 training thigmotaxis ftr_post_dtpsd sd    
1 training velocity ftr_pre_vel mean fear training pre-stimulus velocity, day 1 cm/s
1 training velocity ftr_post_vel mean fear training post-stimulus velocity, day 1 cm/s
1 training velocity ftr_velhab extinction    
1 training velocity ftr_pre_velsd sd    
1 training velocity ftr_post_velsd sd    
1 training velocity ftr_velsdhab extinction    
1 training meander ftr_pre_mea mean    
1 training meander ftr_post_mea mean    
1 training meander ftr_meahab extinction    
1 training meander ftr_pre_measd sd    
1 training meander ftr_post_measd sd    
1 training meander ftr_measdhab extinction    
1 training immobility ftr_pre_imob mean fear training pre-stimulus percent time immobile, day 1 %
1 training immobility ftr_post_imob mean fear training post-stimulus percent time immobile, day 1 %
1 training immobility ftr_pre_imobsd sd    
1 training immobility ftr_post_imobsd sd    
1 training immobility ftr_pre_mob mean    
1 training immobility ftr_post_mob mean    
1 training immobility ftr_pre_mobsd sd    
1 training immobility ftr_post_mobsd sd    
1 training activity burst ftr_post_act_burst   fear training activity burst to footshock (shock reactivity), day 1 cm/s
2 context thigmotaxis ctx_thig mean contextual fear thigmotaxis, percent time spent near chamber walls, day 2 %
2 context thigmotaxis ctx_thighab extinction    
2 context thigmotaxis ctx_dtp mean    
2 context thigmotaxis ctx_dtphab extinction    
2 context thigmotaxis ctx_dtpsd sd    
2 context thigmotaxis ctx_dtpsdext sd    
2 context velocity ctx_vel mean contextual fear velocity, day 2 cm/s
2 context velocity ctx_velext extinction    
2 context velocity ctx_velsd sd    
2 context velocity ctx_velsdext sd    
2 context meander ctx_mea mean    
2 context meander ctx_meaext extinction    
2 context meander ctx_measdext extinction    
2 context immobility ctx_imob mean contextual fear percent time immobile, day 2 %
2 context immobility ctx_imobext extinction    
2 context immobility ctx_imobsd sd    
2 context immobility ctx_imobsdext extinction    
2 context immobility ctx_mob mean    
2 context immobility ctx_mobext extinction    
2 context immobility ctx_mobsd sd    
2 context immobility ctx_mobsdext extinction    
3 cue thigmotaxis precue_thig mean cued fear (pre-cue) thigmotaxis, percent time spent near chamber walls, day 3 %
3 cue thigmotaxis cue_thig mean cued fear thigmotaxis, percent time spent near chamber walls, day 3 %
3 cue thigmotaxis cue_thigext extinction    
3 cue velocity precue_vel mean cued fear (pre-cue) velocity, day 3 cm/s
3 cue velocity cue_vel mean cued fear velocity, day 3 cm/s
3 cue velocity cue_vhab extinction    
3 cue velocity precue_velsd sd    
3 cue velocity cue_velsd sd    
3 cue velocity cue_vsdhab extinction    
3 cue meander precue_mea mean    
3 cue meander cue_mea mean    
3 cue meander cue_meahab extinction    
3 cue meander cue_msdhab extinction    
3 cue immobility precue_imob mean cued fear (pre-cue) percent time immobile, day 3 %
3 cue immobility cue_imob mean cued fear percent time immobile, day 3 %
3 cue immobility cue_imobext extinction    
3 cue immobility precue_imobsd sd    
3 cue immobility cue_imobsd sd    
3 cue immobility cue_imobsdext sd    
3 cue immobility precue_mob mean    
3 cue immobility cue_mob mean    
3 cue immobility cue_mobhab extinction    
3 cue immobility precue_mobsd sd    
3 cue immobility cue_mobsd sd    
3 cue immobility cue_mobsdhab extinction    
3 cue thigmotaxis precue_dtp mean    
3 cue thigmotaxis cue_dtp mean    
3 cue thigmotaxis cue_dtphab extinction    
3 cue thigmotaxis precue_dtpsd sd    
3 cue thigmotaxis cue_dtpsd sd    
3 cue thigmotaxis cue_dtpsdhab extinction    
3 cue thigmotaxis precue_thig2 mean    
3 cue thigmotaxis cue_thig2 mean    
3 cue thigmotaxis cue_thig2ext extinction    

Download supplementary data: HMDPpheno4_suppdata.xlxs