Project protocol - Contents
- Workflow and sampling
 - Reagents and solutions
 - Procedure: H5N1 preparation and inoculation
 - Definitions and calculations
 - Data
 Workflow and sampling
 Step Procedure performed *Data collected 1Prepare viral inoculum  - 2Weigh mice (pre-infection)  - 3Inoculate mice  4Monitor mice 30 days for morbidity and mortality; weigh mice periodically  body weight, survival* Additional data available in Boon1_suppdata.xlxs
Procedure: H5N1 preparation and inoculation
- A reverse genetics variant of A/HongKong/213/03, a highly pathogenic H5N1 influenza A virus, is propatated in 10-day-old embryonated chicken eggs as described in Boon et al., 2011.
 - Mice are inoculated intranasally in a volume of 30 µL PBS; EID50 six doses ranging serially from 10 to 1,000,000.
 - Mice are monitored for 30 days for signs of morbidity and mortality; body weights and survival are recorded.
 Definitions and calculations
- EID: egg infective dose
 - EID50 lo: 10, 100, 1000 (for grouping data)
 - EID50 med: 10,000 (for grouping data)
 - EID50 hi: 100,000 to 1,000,000 (for grouping data)
 - Resistance/susceptibility: investigators set cut off at 104 EID50
 
- body weight, pre-infection
 - *body weight, post-infection, days 4, 7, 10
 - percent changes in body weight, post infection
 - survival
 - *mortality
 * Available in Supplementary data file only Boon1_suppdata.xlxs