Phenotype measures set:   Palmer2   activity_OFT

ID, description, units MPD:30001   activity_OFT   distance traveled   [cm]
methamphetamine study
Measures • day 1 control    • day 2 control    • day 3 Rx
Data set, strains Palmer2   B6.A consomic w/par   21 strains     sex: both     age: 7-16wks
Procedure open field test
Comparisonrepeated measures, set of trials, same cohort
Ontology mappings

  SIDE-BY-SIDE STRAIN CURVES
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  OVERLAPPING STRAIN CURVES
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Palmer2 - distance traveled





  ANOVA, Q-Q NORMALITY ASSESSMENT

ANOVA Summary          "within" = Within error     "between" = Between Error (Animal ID)

Factor DF Sum of squares Mean sum of squares F value p-value (Pr>F)
between   sex 1 647.0942 647.0942 0.0 0.9948
between   strain 20 4415229734.4666 220761486.7233 14.6695 < 0.0001
between   sex:strain 20 447438529.3186 22371926.4659 1.4866 0.0803
between   Residuals 497 7479348398.9202 15048990.7423
within   group 2 52221100457.614 26110550228.807 2646.7049 < 0.0001
within   group:sex 2 35213855.639 17606927.8195 1.7847 0.1684
within   group:strain 40 4385711967.6299 109642799.1907 11.114 < 0.0001
within   group:sex:strain 40 568005473.9593 14200136.849 1.4394 0.0394
within   Residuals 994 9806112821.1578 9865304.6491

Q-Q normality assessment based on residuals

  


  INDIVIDUAL MEASURES
ProjectIDDrug or
challenge
Description and varname PanelStrains
tested
SexAge
Palmer2 30001 open field test methamphetamine distance traveled   [cm]   control (day 1)   activity_d1_OFT B6.A consomic w/par 21 both 7-16wks
Palmer2 30002 open field test methamphetamine distance traveled   [cm]   control (day 2)   activity_d2_OFT B6.A consomic w/par 21 both 7-16wks
Palmer2 30003 open field test methamphetamine distance traveled   [cm]   day 3 Rx   methactivity_d3_OFT B6.A consomic w/par 21 both 7-16wks