MPD: Project measures / variables set: Palmer2 activity

Project measures / variables set: Palmer2 activity_OFT

ID, description, units	MPD:30001 activity_OFT distance traveled [cm] methamphetamine study
Measures	• day 1 control • day 2 control • day 3 Rx
Data set, strains	Palmer2 B6.A consomic w/par 21 strains sex: both age: 7-16wks
Procedure	open field test
Comparison	repeated measures, set of trials, same cohort
Ontology mappings	VT:0001392 locomotor behavior trait VT:0010716 anxiety-related behavior trait VT:0010719 response to methamphetamine trait MP:0001362 abnormal anxiety-related response MP:0001392 abnormal locomotor behavior MP:0012733 abnormal behavioral response to methamphetamine

Values Means Δ Means Z-scores

Graph Type Points Bars

Dimensions Width: × Height: px

Plot Options Hide Error Bars Strains on X-axis

Data Type:

Dimensions Height: px

Toggle Series

Plot Options Show Standard Error Show Point Labels Flip Axes Shared Tooltip Connect Gaps

Advanced Plot Options

Separate Plot Factor(s)

Legend Factor(s)

X-Axis Factor(s)

Include/Exclude Factor Values

Palmer2 - distance traveled

ANOVA, Q-Q NORMALITY ASSESSMENT

ANOVA Summary "within" = Within error "between" = Between Error (Animal ID)

Factor	DF	Sum of squares	Mean sum of squares	F value	p-value (Pr>F)
between sex	1	647.0942	647.0942	0.0	0.9948
between strain	20	4415229734.4666	220761486.7233	14.6695	< 0.0001
between sex:strain	20	447438529.3186	22371926.4659	1.4866	0.0803
between Residuals	497	7479348398.9202	15048990.7423
within group	2	52221100457.614	26110550228.807	2646.7049	< 0.0001
within group:sex	2	35213855.639	17606927.8195	1.7847	0.1684
within group:strain	40	4385711967.6299	109642799.1907	11.114	< 0.0001
within group:sex:strain	40	568005473.9593	14200136.849	1.4394	0.0394
within Residuals	994	9806112821.1578	9865304.6491

Q-Q normality assessment based on residuals

INDIVIDUAL MEASURES

Project	ID		Treatment	Measure / Variable Description	Panel	Strains tested	Sex	Age
Palmer2	30001	open field test	methamphetamine	distance traveled [cm] control (day 1) activity_d1_OFT	B6.A consomic w/par	21	both	7-16wks
Palmer2	30002	open field test	methamphetamine	distance traveled [cm] control (day 2) activity_d2_OFT	B6.A consomic w/par	21	both	7-16wks
Palmer2	30003	open field test	methamphetamine	distance traveled [cm] day 3 Rx methactivity_d3_OFT	B6.A consomic w/par	21	both	7-16wks