Project measure / variable:   Schwartz2   pctNEUT_ova0

ID, description, units MPD:9846   pctNEUT_ova0   alveolar neutrophils (percentage of total lavage cells), pre-challenge   [%]  OVA-sensitized  
ovalbumin study
Data set, strains Schwartz2   inbred   8 strains     sex: m     age: 6-8wks
Procedure bronchoalveolar lavage assessment
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  STRAIN COMPARISON PLOT
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Schwartz2 - alveolar neutrophils (percentage of total lavage cells), pre-challenge OVA-sensitized



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means0.833   %
Median of the strain means0.666   %
SD of the strain means± 0.943
Coefficient of variation (CV)1.13
Min–max range of strain means0   –   2.67   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 18.6667 2.6667 2.2857 0.081
Residuals 16 18.6667 1.1667


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.33 0.577   3 0.333 0.433 1.0, 2.0 0.53
A/J m 0.0 0.0   3 0.0 0.0 -0.88
BALB/cJ m 2.67 2.89   3 1.67 1.08 1.0, 6.0 1.95
BTBR T+ Itpr3tf/J m 0.333 0.577   3 0.333 1.73 -0.53
C3H/HeJ m 0.0 0.0   3 0.0 0.0 -0.88
C57BL/6J m 1.0 0.0   3 0.0 0.0 1.0, 1.0 0.18
DBA/2J m 0.0 0.0   3 0.0 0.0 -0.88
FVB/NJ m 1.33 0.577   3 0.333 0.433 1.0, 2.0 0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.3333 0.6236 2.6553 0.0113
A/J m 0.0 0.6236 1.322 -1.322
BALB/cJ m 2.6667 0.6236 3.9887 1.3447
BTBR T+ Itpr3tf/J m 0.3333 0.6236 1.6553 -0.9887
C3H/HeJ m 0.0 0.6236 1.322 -1.322
C57BL/6J m 1.0 0.6236 2.322 -0.322
DBA/2J m 0.0 0.6236 1.322 -1.322
FVB/NJ m 1.3333 0.6236 2.6553 0.0113




  GWAS USING LINEAR MIXED MODELS