Project measure / variable:   Schwartz2   pctNEUT_ctrl72

ID, description, units MPD:9844   pctNEUT_ctrl72   alveolar neutrophils (percentage of total lavage cells), 72h post-challenge   [%]  control  
ovalbumin study
Data set, strains Schwartz2   inbred   8 strains     sex: m     age: 6-8wks
Procedure bronchoalveolar lavage assessment
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  STRAIN COMPARISON PLOT
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Schwartz2 - alveolar neutrophils (percentage of total lavage cells), 72h post-challenge control



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means0.481   %
Median of the strain means0.400   %
SD of the strain means± 0.485
Coefficient of variation (CV)1.01
Min–max range of strain means0   –   1.40   %
Mean sample size per strain4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 7.6932 1.099 1.3534 0.2621
Residuals 29 23.55 0.8121


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.0 2.0   4 1.0 2.0 1.07
A/J m 0.4 0.894   5 0.4 2.24 -0.17
BALB/cJ m 1.4 1.14   5 0.51 0.814 1.89
BTBR T+ Itpr3tf/J m 0.0 0.0   4 0.0 0.0 -0.99
C3H/HeJ m 0.4 0.548   5 0.245 1.37 -0.17
C57BL/6J m 0.25 0.5   4 0.25 2.0 -0.48
DBA/2J m 0.4 0.548   5 0.245 1.37 -0.17
FVB/NJ m 0.0 0.0   5 0.0 0.0 -0.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.0 0.4506 1.9215 0.0785
A/J m 0.4 0.403 1.2242 -0.4242
BALB/cJ m 1.4 0.403 2.2242 0.5758
BTBR T+ Itpr3tf/J m 0.0 0.4506 0.9215 -0.9215
C3H/HeJ m 0.4 0.403 1.2242 -0.4242
C57BL/6J m 0.25 0.4506 1.1715 -0.6715
DBA/2J m 0.4 0.403 1.2242 -0.4242
FVB/NJ m 0.0 0.403 0.8242 -0.8242




  GWAS USING LINEAR MIXED MODELS