Phenotype measure:   Schwartz2   pctNEUT_ctrl48


  STRAIN COMPARISON PLOT
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Schwartz2 - alveolar neutrophils (percentage of total lavage cells), 48h post-challenge control



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means2.51   %
Median of the strain means1.55   %
SD of the strain means± 3.47
Coefficient of variation (CV)1.38
Min–max range of strain means0   –   10.2   %
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 414.0692 59.1527 2.325 0.0498
Residuals 31 788.7 25.4419


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.5 0.935   5 0.418 0.624 0.5, 3.0 -0.29
A/J m 0.0 0.0   4 0.0 0.0 -0.72
BALB/cJ m 1.6 1.14   5 0.51 0.713 -0.26
BTBR T+ Itpr3tf/J m 1.6 1.67   5 0.748 1.05 -0.26
C3H/HeJ m 4.8 10.2   5 4.55 2.12 0.66
C57BL/6J m 10.2 9.36   5 4.19 0.918 1.0, 23.0 2.22
DBA/2J m 0.4 0.894   5 0.4 2.24 -0.61
FVB/NJ m 0.0 0.0   5 0.0 0.0 -0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.5 2.2557 6.1006 -3.1006
A/J m 0.0 2.522 5.1437 -5.1437
BALB/cJ m 1.6 2.2557 6.2006 -3.0006
BTBR T+ Itpr3tf/J m 1.6 2.2557 6.2006 -3.0006
C3H/HeJ m 4.8 2.2557 9.4006 0.1994
C57BL/6J m 10.2 2.2557 14.8006 5.5994
DBA/2J m 0.4 2.2557 5.0006 -4.2006
FVB/NJ m 0.0 2.2557 4.6006 -4.6006




  GWAS USING LINEAR MIXED MODELS