Project measure / variable:   Schwartz2   pctNEUT_ctrl24

ID, description, units MPD:9842   pctNEUT_ctrl24   alveolar neutrophils (percentage of total lavage cells), 24h post-challenge   [%]  control  
ovalbumin study
Data set, strains Schwartz2   inbred   8 strains     sex: m     age: 6-8wks
Procedure bronchoalveolar lavage assessment
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  STRAIN COMPARISON PLOT
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Schwartz2 - alveolar neutrophils (percentage of total lavage cells), 24h post-challenge control



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means6.58   %
Median of the strain means1.30   %
SD of the strain means± 12.2
Coefficient of variation (CV)1.85
Min–max range of strain means0   –   36.0   %
Mean sample size per strain5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 5196.975 742.425 46.1941 < 0.0001
Residuals 32 514.3 16.0719


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.2 1.44   5 0.644 1.2 -0.44
A/J m 1.4 0.894   5 0.4 0.639 -0.42
BALB/cJ m 8.6 4.56   5 2.04 0.53 5.0, 16.0 0.17
BTBR T+ Itpr3tf/J m 36.0 10.0   5 4.47 0.278 27.0, 50.0 2.41
C3H/HeJ m 3.0 1.87   5 0.837 0.624 1.0, 6.0 -0.29
C57BL/6J m 1.2 1.1   5 0.49 0.913 -0.44
DBA/2J m 1.2 0.447   5 0.2 0.373 1.0, 2.0 -0.44
FVB/NJ m 0.0 0.0   5 0.0 0.0 -0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.2 1.7929 4.852 -2.452
A/J m 1.4 1.7929 5.052 -2.252
BALB/cJ m 8.6 1.7929 12.252 4.948
BTBR T+ Itpr3tf/J m 36.0 1.7929 39.652 32.348
C3H/HeJ m 3.0 1.7929 6.652 -0.652
C57BL/6J m 1.2 1.7929 4.852 -2.452
DBA/2J m 1.2 1.7929 4.852 -2.452
FVB/NJ m 0.0 1.7929 3.652 -3.652




  GWAS USING LINEAR MIXED MODELS