Project measure / variable:   Schwartz2   pctNEUT_ctrl0

ID, description, units MPD:9841   pctNEUT_ctrl0   alveolar neutrophils (percentage of total lavage cells), pre-challenge   [%]  control  
ovalbumin study
Data set, strains Schwartz2   inbred   8 strains     sex: m     age: 6-8wks
Procedure bronchoalveolar lavage assessment
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  STRAIN COMPARISON PLOT
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Schwartz2 - alveolar neutrophils (percentage of total lavage cells), pre-challenge control

129S1/SvImJDBA/2JBTBR T<+> Itpr3<tf>/JFVB/NJC3H/HeJC57BL/6JBALB/cJA/J % 024681012femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means0.834   %
Median of the strain means0.167   %
SD of the strain means± 1.59
Coefficient of variation (CV)1.91
Min–max range of strain means0   –   4.67   %
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 53.3333 7.619 1.1082 0.4043
Residuals 16 110.0 6.875


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129S1/SvImJ m 4.67 7.23   3 4.18 1.55 2.41
A/J m 0.0 0.0   3 0.0 0.0 -0.52
BALB/cJ m 0.0 0.0   3 0.0 0.0 -0.52
BTBR T+ Itpr3tf/J m 0.667 1.15   3 0.667 1.73 -0.1
C3H/HeJ m 0.0 0.0   3 0.0 0.0 -0.52
C57BL/6J m 0.0 0.0   3 0.0 0.0 -0.52
DBA/2J m 1.0 1.0   3 0.577 1.0 0.1
FVB/NJ m 0.333 0.577   3 0.333 1.73 -0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 4.6667 1.5138 7.8758 1.4575
A/J m 0.0 1.5138 3.2092 -3.2092
BALB/cJ m 0.0 1.5138 3.2092 -3.2092
BTBR T+ Itpr3tf/J m 0.6667 1.5138 3.8758 -2.5425
C3H/HeJ m 0.0 1.5138 3.2092 -3.2092
C57BL/6J m 0.0 1.5138 3.2092 -3.2092
DBA/2J m 1.0 1.5138 4.2092 -2.2092
FVB/NJ m 0.3333 1.5138 3.5425 -2.8758




  GWAS USING LINEAR MIXED MODELS

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