Project measure / variable:   Schwartz2   pctLYM_ova48

ID, description, units MPD:9828   pctLYM_ova48   alveolar lymphocytes (percentage of total lavage cells), 48h post-challenge   [%]  OVA-sensitized  
ovalbumin study
Data set, strains Schwartz2   inbred   8 strains     sex: m     age: 6-8wks
Procedure bronchoalveolar lavage assessment
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  STRAIN COMPARISON PLOT
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Schwartz2 - alveolar lymphocytes (percentage of total lavage cells), 48h post-challenge OVA-sensitized



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means1.64   %
Median of the strain means1.00   %
SD of the strain means± 1.58
Coefficient of variation (CV)0.963
Min–max range of strain means0.200   –   4.40   %
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 85.6667 12.2381 2.8525 0.0203
Residuals 31 133.0 4.2903


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.5 1.0   4 0.5 2.0 -0.72
A/J m 1.2 2.17   5 0.97 1.81 -0.28
BALB/cJ m 2.0 1.0   5 0.447 0.5 1.0, 3.0 0.23
BTBR T+ Itpr3tf/J m 3.6 4.04   5 1.81 1.12 1.24
C3H/HeJ m 0.4 0.894   5 0.4 2.24 -0.78
C57BL/6J m 4.4 2.97   5 1.33 0.674 1.0, 9.0 1.75
DBA/2J m 0.2 0.447   5 0.2 2.24 -0.91
FVB/NJ m 0.8 0.837   5 0.374 1.05 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.5 1.0357 2.6122 0.0
A/J m 1.2 0.9263 3.0892 0.0
BALB/cJ m 2.0 0.9263 3.8892 0.1108
BTBR T+ Itpr3tf/J m 3.6 0.9263 5.4892 1.7108
C3H/HeJ m 0.4 0.9263 2.2892 0.0
C57BL/6J m 4.4 0.9263 6.2892 2.5108
DBA/2J m 0.2 0.9263 2.0892 0.0
FVB/NJ m 0.8 0.9263 2.6892 0.0




  GWAS USING LINEAR MIXED MODELS