Project measure / variable:   Schwartz2   pctLYM_ctrl72

ID, description, units MPD:9824   pctLYM_ctrl72   alveolar lymphocytes (percentage of total lavage cells), 72h post-challenge   [%]  control  
ovalbumin study
Data set, strains Schwartz2   inbred   8 strains     sex: m     age: 6-8wks
Procedure bronchoalveolar lavage assessment
Ontology mappings

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  STRAIN COMPARISON PLOT


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means1.15   %
Median of the strain means0.450   %
SD of the strain means± 1.34
Coefficient of variation (CV)1.16
Min–max range of strain means0   –   3.40   %
Mean sample size per strain4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 59.027 8.4324 2.307 0.0534
Residuals 29 106.0 3.6552


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129S1/SvImJ m 0.0 0.0   4 0.0 0.0 -0.86
A/J m 2.2 1.48   5 0.663 0.674 0.79
BALB/cJ m 3.4 3.97   5 1.78 1.17 1.68
BTBR T+ Itpr3tf/J m 0.5 1.0   4 0.5 2.0 -0.49
C3H/HeJ m 0.4 0.894   5 0.4 2.24 -0.56
C57BL/6J m 2.5 3.0   4 1.5 1.2 1.01
DBA/2J m 0.2 0.447   5 0.2 2.24 -0.71
FVB/NJ m 0.0 0.0   5 0.0 0.0 -0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.0 0.9559 1.9551 -1.9551
A/J m 2.2 0.855 3.9487 0.4513
BALB/cJ m 3.4 0.855 5.1487 1.6513
BTBR T+ Itpr3tf/J m 0.5 0.9559 2.4551 -1.4551
C3H/HeJ m 0.4 0.855 2.1487 -1.3487
C57BL/6J m 2.5 0.9559 4.4551 0.5449
DBA/2J m 0.2 0.855 1.9487 -1.5487
FVB/NJ m 0.0 0.855 1.7487 -1.7487




  GWAS USING LINEAR MIXED MODELS

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