Project measure / variable:   Schwartz2   pctLYM_ctrl48

ID, description, units MPD:9823   pctLYM_ctrl48   alveolar lymphocytes (percentage of total lavage cells), 48h post-challenge   [%]  control  
ovalbumin study
Data set, strains Schwartz2   inbred   8 strains     sex: m     age: 6-8wks
Procedure bronchoalveolar lavage assessment
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  STRAIN COMPARISON PLOT
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Schwartz2 - alveolar lymphocytes (percentage of total lavage cells), 48h post-challenge control



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means0.900   %
Median of the strain means0.100   %
SD of the strain means± 1.41
Coefficient of variation (CV)1.57
Min–max range of strain means0   –   3.60   %
Mean sample size per strain4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 68.7692 9.8242 3.4608 0.0075
Residuals 31 88.0 2.8387


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.0 0.0   5 0.0 0.0 -0.64
A/J m 0.0 0.0   4 0.0 0.0 -0.64
BALB/cJ m 0.8 0.837   5 0.374 1.05 -0.07
BTBR T+ Itpr3tf/J m 0.2 0.447   5 0.2 2.24 -0.5
C3H/HeJ m 2.6 3.21   5 1.44 1.23 1.21
C57BL/6J m 3.6 3.29   5 1.47 0.913 1.91
DBA/2J m 0.0 0.0   5 0.0 0.0 -0.64
FVB/NJ m 0.0 0.0   5 0.0 0.0 -0.64


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.0 0.7535 1.5367 -1.5367
A/J m 0.0 0.8424 1.7181 -1.7181
BALB/cJ m 0.8 0.7535 2.3367 -0.7367
BTBR T+ Itpr3tf/J m 0.2 0.7535 1.7367 -1.3367
C3H/HeJ m 2.6 0.7535 4.1367 1.0633
C57BL/6J m 3.6 0.7535 5.1367 2.0633
DBA/2J m 0.0 0.7535 1.5367 -1.5367
FVB/NJ m 0.0 0.7535 1.5367 -1.5367




  GWAS USING LINEAR MIXED MODELS