Project measure / variable:   Schwartz2   pctLYM_ctrl24

ID, description, units MPD:9822   pctLYM_ctrl24   alveolar lymphocytes (percentage of total lavage cells), 24h post-challenge   [%]  control  
ovalbumin study
Data set, strains Schwartz2   inbred   8 strains     sex: m     age: 6-8wks
Procedure bronchoalveolar lavage assessment
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  STRAIN COMPARISON PLOT
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Schwartz2 - alveolar lymphocytes (percentage of total lavage cells), 24h post-challenge control



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means0.700   %
Median of the strain means0.500   %
SD of the strain means± 0.944
Coefficient of variation (CV)1.35
Min–max range of strain means0   –   2.80   %
Mean sample size per strain5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 31.2 4.4571 2.3305 0.0485
Residuals 32 61.2 1.9125


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.0 0.0   5 0.0 0.0 -0.74
A/J m 0.2 0.447   5 0.2 2.24 -0.53
BALB/cJ m 2.8 3.49   5 1.56 1.25 1.0, 9.0 2.22
BTBR T+ Itpr3tf/J m 0.0 0.0   5 0.0 0.0 -0.74
C3H/HeJ m 0.8 0.837   5 0.374 1.05 0.11
C57BL/6J m 0.8 0.837   5 0.374 1.05 0.11
DBA/2J m 1.0 1.22   5 0.548 1.22 0.32
FVB/NJ m 0.0 0.0   5 0.0 0.0 -0.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.0 0.6185 1.2598 -1.2598
A/J m 0.2 0.6185 1.4598 -1.0598
BALB/cJ m 2.8 0.6185 4.0598 1.5402
BTBR T+ Itpr3tf/J m 0.0 0.6185 1.2598 -1.2598
C3H/HeJ m 0.8 0.6185 2.0598 -0.4598
C57BL/6J m 0.8 0.6185 2.0598 -0.4598
DBA/2J m 1.0 0.6185 2.2598 -0.2598
FVB/NJ m 0.0 0.6185 1.2598 -1.2598




  GWAS USING LINEAR MIXED MODELS