Phenotype measure:   Brown1   open_prop_EZM


  STRAIN COMPARISON PLOT
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Brown1 - open zone, proportion of total time



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains13 strains
Mean of the strain means0.369   ratio 0.379   ratio
Median of the strain means0.385   ratio 0.404   ratio
SD of the strain means± 0.135 ± 0.131
Coefficient of variation (CV)0.367 0.346
Min–max range of strain means0.160   –   0.565   ratio 0.187   –   0.568   ratio
Mean sample size per strain10.1   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0129 0.0129 0.3307 0.566
strain 9 2.6963 0.2996 7.6844 < 0.0001
sex:strain 9 0.2697 0.03 0.7688 0.6454
Residuals 170 6.6277 0.039


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.327 0.207   10 0.0654 0.632 0.163, 0.851 -0.31
129S1/SvImJ m 0.208 0.109   10 0.0345 0.525 0.094, 0.448 -1.3
A/J f 0.454 0.328   12 0.0947 0.722 0.63
A/J m 0.568 0.222   6 0.0904 0.39 0.178, 0.839 1.44
AKR/J f 0.262 0.167   12 0.0481 0.636 0.07, 0.534 -0.79
AKR/J m 0.187 0.133   6 0.0542 0.709 0.05, 0.418 -1.46
BALB/cByJ f 0.492 0.27   22 0.0575 0.548 0.91
BALB/cByJ m 0.549 0.28   12 0.0809 0.511 0.148, 1.0 1.3
BALB/cJ f 0.385 0.256   14 0.0685 0.666 0.036, 0.815 0.12
BALB/cJ m 0.404 0.228   10 0.0722 0.566 0.008, 0.711 0.19
C57BL/6J f 0.224 0.0641   10 0.0203 0.285 0.137, 0.32 -1.07
C57BL/6J m 0.194 0.0738   10 0.0233 0.38 0.09, 0.287 -1.41
CAST/EiJ f 0.233 0.0283   2   0.02 0.121 0.213, 0.253 -1.01
CAST/EiJ m 0.283 0.1   5 0.0449 0.355 0.153, 0.383 -0.73
DBA/2J f 0.16 0.131   6 0.0534 0.816 0.01, 0.324 -1.55
DBA/2J m 0.311 0.056   10 0.0177 0.18 0.226, 0.406 -0.52
FVB/NJ f 0.506 0.123   12 0.0356 0.244 0.245, 0.624 1.01
FVB/NJ m 0.481 0.122   12 0.0352 0.253 0.287, 0.659 0.78
MOLF/EiJ m 0.4 0.123   10 0.0388 0.307 0.189, 0.592 0.16
SJL/J f 0.454 0.049   6 0.02 0.108 0.375, 0.508 0.63
SJL/J m 0.422 0.0898   3 0.0519 0.213 0.362, 0.525 0.33
SM/J m 0.487 0.228   6 0.0931 0.469 0.231, 0.845 0.82
SPRET/EiJ f 0.565 0.235   9 0.0784 0.416 0.244, 0.966 1.45
SPRET/EiJ m 0.431 0.0   1   0.0 0.0 0.431, 0.431 0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.3275 0.0624 0.4508 0.2042
129S1/SvImJ m 0.2078 0.0624 0.3311 0.0845
A/J f 0.4541 0.057 0.5666 0.3416
A/J m 0.5683 0.0806 0.7275 0.4092
AKR/J f 0.2621 0.057 0.3746 0.1496
AKR/J m 0.1873 0.0806 0.3465 0.0282
BALB/cByJ f 0.492 0.0421 0.5751 0.4089
BALB/cByJ m 0.5489 0.057 0.6614 0.4364
BALB/cJ f 0.3846 0.0528 0.4888 0.2805
BALB/cJ m 0.4037 0.0624 0.527 0.2804
C57BL/6J f 0.2245 0.0624 0.3478 0.1012
C57BL/6J m 0.194 0.0624 0.3173 0.0707
CAST/EiJ f 0.233 0.1396 0.5086 0.0
CAST/EiJ m 0.2834 0.0883 0.4577 0.1091
DBA/2J f 0.1602 0.0806 0.3193 0.001
DBA/2J m 0.311 0.0624 0.4343 0.1877
FVB/NJ f 0.5063 0.057 0.6189 0.3938
FVB/NJ m 0.4809 0.057 0.5934 0.3684
SJL/J f 0.4537 0.0806 0.6128 0.2945
SJL/J m 0.4217 0.114 0.6467 0.1966


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.2677 0.0442 0.3548 0.1805
A/J both 0.5112 0.0494 0.6087 0.4138
AKR/J both 0.2247 0.0494 0.3222 0.1273
BALB/cByJ both 0.5205 0.0354 0.5904 0.4505
BALB/cJ both 0.3942 0.0409 0.4749 0.3135
C57BL/6J both 0.2092 0.0442 0.2964 0.1221
CAST/EiJ both 0.2582 0.0826 0.4213 0.0951
DBA/2J both 0.2356 0.051 0.3362 0.1349
FVB/NJ both 0.4936 0.0403 0.5732 0.4141
SJL/J both 0.4377 0.0698 0.5755 0.2999




  GWAS USING LINEAR MIXED MODELS