Phenotype measure:   Brown1   open_ent_EZM


  STRAIN COMPARISON PLOT
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Brown1 - open zone entries



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains13 strains
Mean of the strain means9.54   n 10.2   n
Median of the strain means9.00   n 11.2   n
SD of the strain means± 5.14 ± 4.20
Coefficient of variation (CV)0.539 0.412
Min–max range of strain means2.78   –   20.7   n 3.00   –   16.0   n
Mean sample size per strain10.1   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 23.7147 23.7147 0.8411 0.3604
strain 9 2197.4116 244.1568 8.6597 < 0.0001
sex:strain 9 692.1535 76.9059 2.7277 0.0054
Residuals 170 4793.0833 28.1946


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6.3 2.79   10 0.883 0.443 3.0, 11.0 -0.63
129S1/SvImJ m 8.2 4.54   10 1.44 0.554 2.0, 16.0 -0.48
A/J f 5.67 6.33   12 1.83 1.12 -0.75
A/J m 3.67 1.63   6 0.667 0.445 1.0, 6.0 -1.55
AKR/J f 10.5 6.22   12 1.79 0.592 4.0, 24.0 0.19
AKR/J m 6.17 3.76   6 1.54 0.61 2.0, 13.0 -0.96
BALB/cByJ f 10.0 5.99   22 1.28 0.599 0.09
BALB/cByJ m 12.2 7.97   12 2.3 0.65 1.0, 30.0 0.47
BALB/cJ f 7.0 4.85   14 1.3 0.693 1.0, 20.0 -0.49
BALB/cJ m 14.1 7.65   10 2.42 0.543 1.0, 24.0 0.93
C57BL/6J f 9.5 2.22   10 0.703 0.234 5.0, 12.0 -0.01
C57BL/6J m 7.3 3.8   10 1.2 0.521 4.0, 13.0 -0.69
CAST/EiJ f 9.0 1.41   2   1.0 0.157 8.0, 10.0 -0.1
CAST/EiJ m 11.2 4.6   5 2.06 0.411 5.0, 18.0 0.24
DBA/2J f 6.67 5.85   6 2.39 0.878 1.0, 15.0 -0.56
DBA/2J m 11.0 3.56   10 1.13 0.324 7.0, 17.0 0.19
FVB/NJ f 16.8 5.36   12 1.55 0.318 7.0, 23.0 1.41
FVB/NJ m 16.0 4.07   12 1.17 0.254 10.0, 22.0 1.38
MOLF/EiJ m 12.9 4.2   10 1.33 0.326 6.0, 18.0 0.64
SJL/J f 20.7 7.15   6 2.92 0.346 10.0, 28.0 2.17
SJL/J m 11.7 1.15   3 0.667 0.099 11.0, 13.0 0.36
SM/J m 15.2 6.27   6 2.56 0.414 8.0, 23.0 1.19
SPRET/EiJ f 2.78 1.39   9 0.465 0.502 1.0, 5.0 -1.31
SPRET/EiJ m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -1.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6.3 1.6791 9.6146 2.9854
129S1/SvImJ m 8.2 1.6791 11.5146 4.8854
A/J f 5.6667 1.5328 8.6925 2.6408
A/J m 3.6667 2.1677 7.9458 0.0
AKR/J f 10.5 1.5328 13.5258 7.4742
AKR/J m 6.1667 2.1677 10.4458 1.8875
BALB/cByJ f 10.0 1.1321 12.2347 7.7653
BALB/cByJ m 12.25 1.5328 15.2758 9.2242
BALB/cJ f 7.0 1.4191 9.8014 4.1986
BALB/cJ m 14.1 1.6791 17.4146 10.7854
C57BL/6J f 9.5 1.6791 12.8146 6.1854
C57BL/6J m 7.3 1.6791 10.6146 3.9854
CAST/EiJ f 9.0 3.7546 16.4117 1.5883
CAST/EiJ m 11.2 2.3746 15.8876 6.5124
DBA/2J f 6.6667 2.1677 10.9458 2.3875
DBA/2J m 11.0 1.6791 14.3146 7.6854
FVB/NJ f 16.8333 1.5328 19.8592 13.8075
FVB/NJ m 16.0 1.5328 19.0258 12.9742
SJL/J f 20.6667 2.1677 24.9458 16.3875
SJL/J m 11.6667 3.0656 17.7183 5.615


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7.25 1.1873 9.5938 4.9062
A/J both 4.6667 1.3275 7.2871 2.0462
AKR/J both 8.3333 1.3275 10.9538 5.7129
BALB/cByJ both 11.125 0.9528 13.0058 9.2442
BALB/cJ both 10.55 1.0992 12.7199 8.3801
C57BL/6J both 8.4 1.1873 10.7438 6.0562
CAST/EiJ both 10.1 2.2213 14.4848 5.7152
DBA/2J both 8.8333 1.371 11.5397 6.127
FVB/NJ both 16.4167 1.0839 18.5562 14.2771
SJL/J both 16.1667 1.8773 19.8725 12.4608




  GWAS USING LINEAR MIXED MODELS