Phenotype measure:   Brown1   open_dur_EZM


  STRAIN COMPARISON PLOT
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Brown1 - open zone duration



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains13 strains
Mean of the strain means110   s 113   s
Median of the strain means114   s 119   s
SD of the strain means± 40.3 ± 38.5
Coefficient of variation (CV)0.367 0.342
Min–max range of strain means48.0   –   168   s 56.0   –   166   s
Mean sample size per strain10.1   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1109.39 1109.39 0.3189 0.573
strain 9 235172.9473 26130.3275 7.5117 < 0.0001
sex:strain 9 23013.9573 2557.1064 0.7351 0.6763
Residuals 170 591365.4527 3478.6203


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 98.0 62.0   10 19.6 0.633 48.8, 255.0 -0.3
129S1/SvImJ m 62.1 32.7   10 10.3 0.526 28.1, 134.0 -1.31
A/J f 135.0 97.5   12 28.1 0.723 0.62
A/J m 166.0 66.0   6 27.0 0.398 53.4, 248.0 1.39
AKR/J f 76.3 48.7   12 14.0 0.638 15.0, 152.0 -0.83
AKR/J m 56.0 39.7   6 16.2 0.709 14.9, 125.0 -1.47
BALB/cByJ f 146.0 81.0   22 17.3 0.556 0.9
BALB/cByJ m 163.0 84.7   12 24.5 0.521 44.5, 300.0 1.31
BALB/cJ f 114.0 76.8   14 20.5 0.676 10.7, 244.0 0.1
BALB/cJ m 119.0 66.9   10 21.2 0.564 2.31, 210.0 0.17
C57BL/6J f 67.1 19.2   10 6.06 0.286 41.1, 95.9 -1.06
C57BL/6J m 57.9 22.0   10 6.97 0.381 27.0, 86.0 -1.42
CAST/EiJ f 69.7 8.63   2   6.1 0.124 63.6, 75.8 -1.0
CAST/EiJ m 84.7 30.1   5 13.5 0.356 45.8, 115.0 -0.72
DBA/2J f 48.0 39.1   6 16.0 0.816 2.91, 96.9 -1.54
DBA/2J m 93.2 16.9   10 5.35 0.181 67.8, 122.0 -0.5
FVB/NJ f 151.0 36.5   12 10.5 0.242 73.4, 187.0 1.02
FVB/NJ m 143.0 36.3   12 10.5 0.253 85.7, 197.0 0.79
MOLF/EiJ m 118.0 36.2   10 11.4 0.305 56.8, 171.0 0.14
SJL/J f 136.0 14.5   6 5.94 0.107 112.0, 152.0 0.65
SJL/J m 126.0 25.6   3 14.8 0.204 108.0, 155.0 0.35
SM/J m 145.0 68.4   6 27.9 0.473 69.3, 253.0 0.84
SPRET/EiJ f 168.0 69.1   9 23.0 0.411 73.3, 290.0 1.44
SPRET/EiJ m 129.0 0.0   1   0.0 0.0 129.0, 129.0 0.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 98.05 18.6511 134.8675 61.2325
129S1/SvImJ m 62.14 18.6511 98.9575 25.3225
A/J f 134.7417 17.026 168.3513 101.132
A/J m 165.7333 24.0784 213.2645 118.2021
AKR/J f 76.2583 17.026 109.868 42.6487
AKR/J m 55.9833 24.0784 103.5145 8.4521
BALB/cByJ f 145.7227 12.5745 170.5451 120.9004
BALB/cByJ m 162.7417 17.026 196.3513 129.132
BALB/cJ f 113.6286 15.763 144.745 82.5121
BALB/cJ m 118.621 18.6511 155.4385 81.8035
C57BL/6J f 67.08 18.6511 103.8975 30.2625
C57BL/6J m 57.89 18.6511 94.7075 21.0725
CAST/EiJ f 69.7 41.705 152.0264 0.0
CAST/EiJ m 84.68 26.3766 136.7478 32.6122
DBA/2J f 47.9817 24.0784 95.5129 0.4505
DBA/2J m 93.25 18.6511 130.0675 56.4325
FVB/NJ f 150.6 17.026 184.2096 116.9904
FVB/NJ m 143.3917 17.026 177.0013 109.782
SJL/J f 135.6667 24.0784 183.1979 88.1355
SJL/J m 125.6667 34.052 192.8859 58.4474


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 80.095 13.1883 106.1289 54.0611
A/J both 150.2375 14.745 179.3443 121.1307
AKR/J both 66.1208 14.745 95.2276 37.014
BALB/cByJ both 154.2322 10.5831 175.1233 133.3411
BALB/cJ both 116.1248 12.21 140.2275 92.0221
C57BL/6J both 62.485 13.1883 88.5189 36.4511
CAST/EiJ both 77.19 24.673 125.895 28.485
DBA/2J both 70.6158 15.2285 100.6772 40.5545
FVB/NJ both 146.9958 12.0392 170.7614 123.2302
SJL/J both 130.6667 20.8525 171.8299 89.5034




  GWAS USING LINEAR MIXED MODELS