Phenotype measure:   Brown1   trans_LD


  STRAIN COMPARISON PLOT
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Brown1 - transitions between light and dark zones



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means16.0   n 16.6   n
Median of the strain means14.6   n 16.1   n
SD of the strain means± 9.60 ± 9.72
Coefficient of variation (CV)0.600 0.586
Min–max range of strain means5.42   –   34.1   n 2.69   –   35.7   n
Mean sample size per strain12.9   mice 12.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 54.4187 54.4187 1.1854 0.277
strain 13 30552.8688 2350.2207 51.1929 < 0.0001
sex:strain 13 681.7906 52.4454 1.1424 0.322
Residuals 337 15471.3712 45.9091


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 12.8 6.98   12 2.02 0.548 2.0, 24.0 -0.33
129S1/SvImJ m 9.42 6.47   12 1.87 0.687 1.0, 21.0 -0.74
A/J f 5.42 4.21   12 1.22 0.777 1.0, 13.0 -1.1
A/J m 2.69 2.77   16 0.694 1.03 1.0, 12.0 -1.43
AKR/J f 7.42 3.18   12 0.917 0.428 4.0, 14.0 -0.89
AKR/J m 9.21 4.44   19 1.02 0.482 4.0, 21.0 -0.76
BALB/cByJ f 7.73 7.89   22 1.68 1.02 2.0, 31.0 -0.86
BALB/cByJ m 8.5 5.54   12 1.6 0.651 1.0, 22.0 -0.83
BALB/cJ f 6.43 4.97   14 1.33 0.773 2.0, 19.0 -1.0
BALB/cJ m 7.42 5.57   12 1.61 0.751 1.0, 15.0 -0.94
C3H/HeJ f 19.1 6.99   19 1.6 0.366 8.0, 33.0 0.32
C3H/HeJ m 17.2 7.89   13 2.19 0.458 6.0, 31.0 0.06
C57BL/6J f 34.1 7.56   12 2.18 0.222 22.0, 48.0 1.88
C57BL/6J m 31.6 4.46   13 1.24 0.141 24.0, 40.0 1.54
CAST/EiJ f 24.2 8.29   9 2.76 0.342 12.0, 36.0 0.85
CAST/EiJ m 25.9 8.45   12 2.44 0.326 12.0, 43.0 0.96
DBA/2J f 8.07 2.59   14 0.691 0.32 3.0, 12.0 -0.83
DBA/2J m 15.6 6.25   13 1.73 0.4 7.0, 30.0 -0.1
FVB/NJ f 32.4 6.75   12 1.95 0.208 22.0, 42.0 1.71
FVB/NJ m 35.7 6.93   12 2.0 0.194 23.0, 46.0 1.96
MOLF/EiJ f 16.3 10.1   12 2.93 0.621 2.0, 31.0 0.03
MOLF/EiJ m 16.5 7.35   11 2.22 0.444 4.0, 27.0 -0.01
SJL/J f 22.3 13.6   13 3.78 0.611 7.0, 46.0 0.65
SJL/J m 21.7 8.81   12 2.54 0.407 6.0, 35.0 0.52
SM/J f 19.4 4.74   10 1.5 0.244 12.0, 27.0 0.35
SM/J m 21.5 8.81   11 2.66 0.411 9.0, 40.0 0.5
SPRET/EiJ f 8.54 2.26   13 0.627 0.265 6.0, 12.0 -0.78
SPRET/EiJ m 9.45 4.18   11 1.26 0.442 4.0, 18.0 -0.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 12.75 1.956 16.5974 8.9026
129S1/SvImJ m 9.4167 1.956 13.2641 5.5692
A/J f 5.4167 1.956 9.2641 1.5692
A/J m 2.6875 1.6939 6.0195 0.0
AKR/J f 7.4167 1.956 11.2641 3.5692
AKR/J m 9.2105 1.5544 12.2681 6.1529
BALB/cByJ f 7.7273 1.4446 10.5688 4.8858
BALB/cByJ m 8.5 1.956 12.3474 4.6526
BALB/cJ f 6.4286 1.8109 9.9906 2.8666
BALB/cJ m 7.4167 1.956 11.2641 3.5692
C3H/HeJ f 19.1053 1.5544 22.1629 16.0476
C3H/HeJ m 17.2308 1.8792 20.9272 13.5343
C57BL/6J f 34.0833 1.956 37.9308 30.2359
C57BL/6J m 31.6154 1.8792 35.3119 27.9189
CAST/EiJ f 24.2222 2.2585 28.6648 19.7796
CAST/EiJ m 25.9167 1.956 29.7641 22.0692
DBA/2J f 8.0714 1.8109 11.6334 4.5094
DBA/2J m 15.6154 1.8792 19.3119 11.9189
FVB/NJ f 32.4167 1.956 36.2641 28.5692
FVB/NJ m 35.6667 1.956 39.5141 31.8192
MOLF/EiJ f 16.3333 1.956 20.1808 12.4859
MOLF/EiJ m 16.5455 2.0429 20.564 12.527
SJL/J f 22.3077 1.8792 26.0042 18.6112
SJL/J m 21.6667 1.956 25.5141 17.8192
SM/J f 19.4 2.1426 23.6146 15.1854
SM/J m 21.4545 2.0429 25.473 17.436
SPRET/EiJ f 8.5385 1.8792 12.2349 4.842
SPRET/EiJ m 9.4545 2.0429 13.473 5.436


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 11.0833 1.3831 13.8039 8.3628
A/J both 4.0521 1.2937 6.5969 1.5073
AKR/J both 8.3136 1.2492 10.7708 5.8564
BALB/cByJ both 8.1136 1.2158 10.5051 5.7222
BALB/cJ both 6.9226 1.3328 9.5442 4.301
C3H/HeJ both 18.168 1.2194 20.5666 15.7694
C57BL/6J both 32.8494 1.3562 35.5171 30.1817
CAST/EiJ both 25.0694 1.4939 28.008 22.1309
DBA/2J both 11.8434 1.3049 14.4101 9.2767
FVB/NJ both 34.0417 1.3831 36.7622 31.3211
MOLF/EiJ both 16.4394 1.4142 19.2211 13.6577
SJL/J both 21.9872 1.3562 24.6549 19.3195
SM/J both 20.4273 1.4802 23.339 17.5156
SPRET/EiJ both 8.9965 1.3879 11.7265 6.2665




  GWAS USING LINEAR MIXED MODELS