Phenotype measure:   Brown1   light_prop_LD


  STRAIN COMPARISON PLOT
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Brown1 - light zone, proportion of total time



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means0.342   ratio 0.355   ratio
Median of the strain means0.295   ratio 0.339   ratio
SD of the strain means± 0.163 ± 0.128
Coefficient of variation (CV)0.479 0.360
Min–max range of strain means0.171   –   0.683   ratio 0.130   –   0.601   ratio
Mean sample size per strain12.9   mice 12.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0255 0.0255 0.6376 0.4252
strain 13 6.6824 0.514 12.8303 < 0.0001
sex:strain 13 0.6606 0.0508 1.2684 0.2303
Residuals 337 13.5015 0.0401


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.683 0.286   12 0.0825 0.419 0.077, 0.976 2.09
129S1/SvImJ m 0.473 0.372   12 0.107 0.787 0.013, 0.997 0.92
A/J f 0.255 0.286   12 0.0825 1.12 -0.53
A/J m 0.447 0.448   16 0.112 1.0 0.72
AKR/J f 0.171 0.108   12 0.0312 0.632 0.047, 0.488 -1.04
AKR/J m 0.197 0.106   19 0.0242 0.535 0.055, 0.479 -1.24
BALB/cByJ f 0.177 0.227   22 0.0484 1.28 0.011, 0.991 -1.01
BALB/cByJ m 0.13 0.122   12 0.0354 0.945 -1.76
BALB/cJ f 0.293 0.227   14 0.0607 0.776 0.029, 0.795 -0.3
BALB/cJ m 0.348 0.353   12 0.102 1.01 0.024, 1.0 -0.05
C3H/HeJ f 0.459 0.167   19 0.0382 0.363 0.107, 0.778 0.72
C3H/HeJ m 0.459 0.15   13 0.0415 0.326 0.067, 0.652 0.81
C57BL/6J f 0.611 0.117   12 0.0339 0.192 0.374, 0.733 1.65
C57BL/6J m 0.601 0.117   13 0.0323 0.194 0.376, 0.764 1.93
CAST/EiJ f 0.298 0.122   9 0.0407 0.41 0.126, 0.581 -0.27
CAST/EiJ m 0.303 0.121   12 0.0349 0.399 0.084, 0.542 -0.41
DBA/2J f 0.183 0.0737   14 0.0197 0.403 0.07, 0.347 -0.97
DBA/2J m 0.293 0.153   13 0.0424 0.522 0.031, 0.586 -0.49
FVB/NJ f 0.494 0.096   12 0.0277 0.194 0.372, 0.723 0.93
FVB/NJ m 0.466 0.0539   12 0.0156 0.116 0.384, 0.568 0.87
MOLF/EiJ f 0.349 0.143   12 0.0413 0.41 0.124, 0.62 0.04
MOLF/EiJ m 0.33 0.12   11 0.0361 0.363 0.042, 0.463 -0.2
SJL/J f 0.349 0.135   13 0.0374 0.386 0.155, 0.618 0.04
SJL/J m 0.408 0.161   12 0.0464 0.394 0.137, 0.619 0.42
SM/J f 0.189 0.0954   10 0.0302 0.504 0.053, 0.412 -0.93
SM/J m 0.233 0.122   11 0.0367 0.521 0.09, 0.444 -0.96
SPRET/EiJ f 0.272 0.187   13 0.0517 0.687 0.029, 0.704 -0.43
SPRET/EiJ m 0.282 0.139   11 0.0419 0.493 0.105, 0.5 -0.57


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.6827 0.0578 0.7964 0.5691
129S1/SvImJ m 0.473 0.0578 0.5867 0.3593
A/J f 0.2552 0.0578 0.3688 0.1415
A/J m 0.4469 0.05 0.5454 0.3485
AKR/J f 0.1709 0.0578 0.2846 0.0573
AKR/J m 0.1971 0.0459 0.2874 0.1067
BALB/cByJ f 0.1767 0.0427 0.2606 0.0927
BALB/cByJ m 0.1296 0.0578 0.2432 0.0159
BALB/cJ f 0.2926 0.0535 0.3979 0.1874
BALB/cJ m 0.3482 0.0578 0.4618 0.2345
C3H/HeJ f 0.4591 0.0459 0.5494 0.3687
C3H/HeJ m 0.4587 0.0555 0.5679 0.3495
C57BL/6J f 0.6111 0.0578 0.7247 0.4974
C57BL/6J m 0.6005 0.0555 0.7097 0.4913
CAST/EiJ f 0.2979 0.0667 0.4291 0.1666
CAST/EiJ m 0.3034 0.0578 0.4171 0.1898
DBA/2J f 0.1828 0.0535 0.288 0.0776
DBA/2J m 0.293 0.0555 0.4022 0.1838
FVB/NJ f 0.4938 0.0578 0.6074 0.3801
FVB/NJ m 0.4656 0.0578 0.5792 0.3519
MOLF/EiJ f 0.349 0.0578 0.4627 0.2353
MOLF/EiJ m 0.3298 0.0604 0.4485 0.2111
SJL/J f 0.3495 0.0555 0.4587 0.2403
SJL/J m 0.408 0.0578 0.5217 0.2943
SM/J f 0.1892 0.0633 0.3137 0.0647
SM/J m 0.2335 0.0604 0.3522 0.1147
SPRET/EiJ f 0.2718 0.0555 0.381 0.1626
SPRET/EiJ m 0.2818 0.0604 0.4005 0.1631


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.5779 0.0409 0.6582 0.4975
A/J both 0.3511 0.0382 0.4262 0.2759
AKR/J both 0.184 0.0369 0.2566 0.1114
BALB/cByJ both 0.1531 0.0359 0.2238 0.0825
BALB/cJ both 0.3204 0.0394 0.3978 0.243
C3H/HeJ both 0.4589 0.036 0.5297 0.388
C57BL/6J both 0.6058 0.0401 0.6846 0.527
CAST/EiJ both 0.3007 0.0441 0.3875 0.2138
DBA/2J both 0.2379 0.0385 0.3137 0.1621
FVB/NJ both 0.4797 0.0409 0.56 0.3993
MOLF/EiJ both 0.3394 0.0418 0.4216 0.2572
SJL/J both 0.3787 0.0401 0.4575 0.2999
SM/J both 0.2113 0.0437 0.2973 0.1253
SPRET/EiJ both 0.2768 0.041 0.3574 0.1961




  GWAS USING LINEAR MIXED MODELS