Phenotype measure:   Brown1   center_ent_d1_OFT

ID, description, units MPD:9451   center_ent_d1_OFT   total center square entries, 5 min test, day 1   [n]
Data set, strains Brown1   inbred   14 strains     sex: both     age: 10wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Brown1 - total center square entries, 5 min test, day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means3.49   n 3.09   n
Median of the strain means3.51   n 3.00   n
SD of the strain means± 2.70 ± 2.14
Coefficient of variation (CV)0.773 0.692
Min–max range of strain means0   –   9.58   n 0.250   –   7.44   n
Mean sample size per strain12.8   mice 13.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 16.7769 16.7769 2.2529 0.1343
strain 13 1859.7427 143.0571 19.2107 < 0.0001
sex:strain 13 251.2545 19.3273 2.5954 0.0019
Residuals 344 2561.6748 7.4467


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   12 0.0 0.0 -1.29
129S1/SvImJ m 0.25 0.452   12 0.131 1.81 -1.33
A/J f 0.583 0.669   12 0.193 1.15 -1.08
A/J m 0.5 0.761   20 0.17 1.52 -1.21
AKR/J f 3.42 2.47   12 0.712 0.722 -0.03
AKR/J m 1.37 1.26   19 0.288 0.918 -0.8
BALB/cByJ f 1.09 1.19   22 0.254 1.09 -0.89
BALB/cByJ m 0.75 1.14   12 0.329 1.52 -1.09
BALB/cJ f 1.21 0.579   14 0.155 0.477 1.0, 3.0 -0.85
BALB/cJ m 1.33 1.07   12 0.31 0.805 -0.82
C3H/HeJ f 6.17 3.78   18 0.89 0.612 0.99
C3H/HeJ m 7.44 5.63   16 1.41 0.757 2.04
C57BL/6J f 3.75 2.09   12 0.605 0.558 1.0, 8.0 0.09
C57BL/6J m 3.23 2.01   13 0.556 0.621 0.07
CAST/EiJ f 3.6 3.27   10 1.03 0.909 0.04
CAST/EiJ m 4.5 2.68   10 0.847 0.595 0.66
DBA/2J f 1.21 1.67   14 0.447 1.38 -0.85
DBA/2J m 2.77 1.83   13 0.508 0.662 -0.15
FVB/NJ f 6.83 3.59   12 1.04 0.525 1.0, 12.0 1.24
FVB/NJ m 5.0 1.81   12 0.522 0.362 2.0, 8.0 0.9
MOLF/EiJ f 9.58 6.01   12 1.73 0.627 1.0, 20.0 2.25
MOLF/EiJ m 5.18 3.16   11 0.952 0.609 2.0, 13.0 0.98
SJL/J f 4.92 3.23   13 0.895 0.655 1.0, 10.0 0.53
SJL/J m 2.58 1.83   12 0.529 0.709 -0.24
SM/J f 3.7 3.74   10 1.18 1.01 0.08
SM/J m 3.33 2.74   12 0.791 0.822 0.11
SPRET/EiJ f 2.85 2.54   13 0.706 0.894 -0.24
SPRET/EiJ m 5.0 4.39   12 1.27 0.878 0.9


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.7878 1.5494 -1.5494
129S1/SvImJ m 0.25 0.7878 1.7994 -1.2994
A/J f 0.5833 0.7878 2.1328 -0.9661
A/J m 0.5 0.6102 1.7002 -0.7002
AKR/J f 3.4167 0.7878 4.9661 1.8672
AKR/J m 1.3684 0.626 2.5998 0.1371
BALB/cByJ f 1.0909 0.5818 2.2352 -0.0534
BALB/cByJ m 0.75 0.7878 2.2994 -0.7994
BALB/cJ f 1.2143 0.7293 2.6488 -0.2202
BALB/cJ m 1.3333 0.7878 2.8828 -0.2161
C3H/HeJ f 6.1667 0.6432 7.4318 4.9016
C3H/HeJ m 7.4375 0.6822 8.7793 6.0957
C57BL/6J f 3.75 0.7878 5.2994 2.2006
C57BL/6J m 3.2308 0.7569 4.7194 1.7421
CAST/EiJ f 3.6 0.8629 5.2973 1.9027
CAST/EiJ m 4.5 0.8629 6.1973 2.8027
DBA/2J f 1.2143 0.7293 2.6488 -0.2202
DBA/2J m 2.7692 0.7569 4.2579 1.2806
FVB/NJ f 6.8333 0.7878 8.3828 5.2839
FVB/NJ m 5.0 0.7878 6.5494 3.4506
MOLF/EiJ f 9.5833 0.7878 11.1328 8.0339
MOLF/EiJ m 5.1818 0.8228 6.8001 3.5635
SJL/J f 4.9231 0.7569 6.4117 3.4344
SJL/J m 2.5833 0.7878 4.1328 1.0339
SM/J f 3.7 0.8629 5.3973 2.0027
SM/J m 3.3333 0.7878 4.8828 1.7839
SPRET/EiJ f 2.8462 0.7569 4.3348 1.3575
SPRET/EiJ m 5.0 0.7878 6.5494 3.4506


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.125 0.557 1.2206 -0.9706
A/J both 0.5417 0.4982 1.5216 -0.4383
AKR/J both 2.3925 0.5031 3.3821 1.403
BALB/cByJ both 0.9205 0.4897 1.8835 -0.0426
BALB/cJ both 1.2738 0.5368 2.3296 0.2181
C3H/HeJ both 6.8021 0.4688 7.7242 5.88
C57BL/6J both 3.4904 0.5462 4.5647 2.4161
CAST/EiJ both 4.05 0.6102 5.2502 2.8498
DBA/2J both 1.9918 0.5255 3.0254 0.9581
FVB/NJ both 5.9167 0.557 7.0123 4.8211
MOLF/EiJ both 7.3826 0.5695 8.5028 6.2623
SJL/J both 3.7532 0.5462 4.8275 2.6789
SM/J both 3.5167 0.5842 4.6658 2.3676
SPRET/EiJ both 3.9231 0.5462 4.9974 2.8487




  GWAS USING LINEAR MIXED MODELS