Phenotype measure:   Brown1   center_dur_d1_OFT

ID, description, units MPD:9450   center_dur_d1_OFT   total time in center square, 5 min test, day 1   [s]
Data set, strains Brown1   inbred   14 strains     sex: both     age: 10wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Brown1 - total time in center square, 5 min test, day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means6.04   s 3.85   s
Median of the strain means5.27   s 3.32   s
SD of the strain means± 4.06 ± 1.90
Coefficient of variation (CV)0.672 0.492
Min–max range of strain means0   –   16.5   s 0.345   –   7.91   s
Mean sample size per strain12.8   mice 13.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 389.4889 389.4889 8.6345 0.0035
strain 13 2103.7264 161.8251 3.5875 < 0.0001
sex:strain 13 1281.9945 98.615 2.1862 0.0098
Residuals 344 15517.2471 45.1083


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   12 0.0 0.0 -1.49
129S1/SvImJ m 0.345 0.866   12 0.25 2.51 -1.85
A/J f 6.46 9.88   12 2.85 1.53 0.1
A/J m 5.09 10.1   20 2.25 1.98 0.65
AKR/J f 16.5 19.8   12 5.71 1.2 2.58
AKR/J m 2.58 2.55   19 0.585 0.989 -0.67
BALB/cByJ f 3.21 4.5   22 0.959 1.4 -0.7
BALB/cByJ m 2.58 5.39   12 1.56 2.09 -0.67
BALB/cJ f 10.3 12.7   14 3.4 1.24 2.09, 47.3 1.05
BALB/cJ m 5.5 5.69   12 1.64 1.04 0.87
C3H/HeJ f 7.98 3.86   18 0.91 0.484 0.48
C3H/HeJ m 7.91 6.97   16 1.74 0.882 2.14
C57BL/6J f 4.41 1.91   12 0.551 0.432 1.21, 8.01 -0.4
C57BL/6J m 2.68 3.2   13 0.889 1.2 -0.62
CAST/EiJ f 4.15 3.98   10 1.26 0.96 -0.47
CAST/EiJ m 3.29 2.02   10 0.638 0.614 -0.3
DBA/2J f 1.35 1.66   14 0.444 1.23 -1.16
DBA/2J m 3.05 2.65   13 0.735 0.869 -0.42
FVB/NJ f 7.0 4.31   12 1.25 0.616 1.04, 16.8 0.24
FVB/NJ m 4.5 2.15   12 0.619 0.477 1.43, 9.62 0.34
MOLF/EiJ f 8.16 5.55   12 1.6 0.68 1.25, 18.3 0.52
MOLF/EiJ m 6.47 6.52   11 1.97 1.01 1.03, 24.3 1.38
SJL/J f 4.51 3.33   13 0.925 0.739 0.391, 14.1 -0.38
SJL/J m 3.16 2.42   12 0.699 0.766 -0.37
SM/J f 4.61 4.69   10 1.48 1.02 -0.35
SM/J m 3.35 3.11   12 0.898 0.929 -0.27
SPRET/EiJ f 5.93 12.2   13 3.38 2.06 -0.03
SPRET/EiJ m 3.45 3.36   12 0.969 0.973 -0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 1.9388 3.8134 -3.8134
129S1/SvImJ m 0.345 1.9388 4.1584 -3.4684
A/J f 6.4617 1.9388 10.2751 2.6482
A/J m 5.0914 1.5018 8.0453 2.1376
AKR/J f 16.5175 1.9388 20.3309 12.7041
AKR/J m 2.58 1.5408 5.6106 -0.4506
BALB/cByJ f 3.2145 1.4319 6.031 0.3981
BALB/cByJ m 2.5833 1.9388 6.3968 -1.2301
BALB/cJ f 10.2686 1.795 13.7991 6.738
BALB/cJ m 5.495 1.9388 9.3084 1.6816
C3H/HeJ f 7.9806 1.583 11.0942 4.8669
C3H/HeJ m 7.9081 1.6791 11.2107 4.6056
C57BL/6J f 4.4133 1.9388 8.2268 0.5999
C57BL/6J m 2.6764 1.8628 6.3402 -0.9874
CAST/EiJ f 4.147 2.1239 8.3244 -0.0304
CAST/EiJ m 3.2854 2.1239 7.4628 -0.892
DBA/2J f 1.3494 1.795 4.88 -2.1811
DBA/2J m 3.0515 1.8628 6.7154 -0.6123
FVB/NJ f 7.0025 1.9388 10.8159 3.1891
FVB/NJ m 4.495 1.9388 8.3084 0.6816
MOLF/EiJ f 8.1642 1.9388 11.9776 4.3507
MOLF/EiJ m 6.4736 2.025 10.4566 2.4906
SJL/J f 4.5147 1.8628 8.1785 0.8509
SJL/J m 3.1609 1.9388 6.9744 -0.6525
SM/J f 4.606 2.1239 8.7834 0.4286
SM/J m 3.3483 1.9388 7.1618 -0.4651
SPRET/EiJ f 5.9339 1.8628 9.5978 2.2701
SPRET/EiJ m 3.4511 1.9388 7.2645 -0.3624


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.1725 1.371 2.869 -2.524
A/J both 5.7766 1.2262 8.1884 3.3647
AKR/J both 9.5488 1.2383 11.9843 7.1132
BALB/cByJ both 2.8989 1.2051 5.2693 0.5286
BALB/cJ both 7.8818 1.3211 10.4802 5.2834
C3H/HeJ both 7.9443 1.1538 10.2138 5.6749
C57BL/6J both 3.5449 1.3443 6.189 0.9007
CAST/EiJ both 3.7162 1.5018 6.6701 0.7623
DBA/2J both 2.2005 1.2934 4.7445 -0.3436
FVB/NJ both 5.7488 1.371 8.4453 3.0522
MOLF/EiJ both 7.3189 1.4018 10.076 4.5618
SJL/J both 3.8378 1.3443 6.4819 1.1937
SM/J both 3.9772 1.4379 6.8053 1.149
SPRET/EiJ both 4.6925 1.3443 7.3366 2.0484




  GWAS USING LINEAR MIXED MODELS