Phenotype measure:   Brown1   urination_EZM



  STRAIN COMPARISON PLOT
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Brown1 - urine puddle count



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains13 strains
Mean of the strain means1.17   n 1.84   n
Median of the strain means0.900   n 1.80   n
SD of the strain means± 0.967 ± 1.19
Coefficient of variation (CV)0.826 0.648
Min–max range of strain means0   –   3.25   n 0   –   5.00   n
Mean sample size per strain10.0   mice 7.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.3039 5.3039 2.9961 0.0853
strain 9 173.296 19.2551 10.8769 < 0.0001
sex:strain 9 23.3974 2.5997 1.4685 0.1633
Residuals 168 297.4069 1.7703


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.9 0.738   10 0.233 0.82 0.0, 2.0 -0.28
129S1/SvImJ m 1.7 1.34   10 0.423 0.787 0.0, 4.0 -0.12
A/J f 0.417 0.9   12 0.26 2.16 0.0, 3.0 -0.78
A/J m 2.5 2.07   6 0.847 0.829 0.0, 5.0 0.55
AKR/J f 3.25 2.01   12 0.579 0.617 1.0, 7.0 2.15
AKR/J m 5.0 1.41   6 0.577 0.283 3.0, 7.0 2.65
BALB/cByJ f 2.32 1.67   22 0.357 0.722 0.0, 5.0 1.19
BALB/cByJ m 2.0 1.48   12 0.426 0.739 0.0, 4.0 0.13
BALB/cJ f 1.93 1.49   14 0.399 0.773 0.0, 5.0 0.79
BALB/cJ m 2.4 1.65   10 0.521 0.686 0.0, 5.0 0.47
C57BL/6J f 0.4 0.516   10 0.163 1.29 0.0, 1.0 -0.8
C57BL/6J m 0.889 1.05   9 0.351 1.19 0.0, 3.0 -0.8
CAST/EiJ f 0.0 0.0   2   0.0 0.0 0.0, 0.0 -1.21
CAST/EiJ m 0.0 0.0   4 0.0 0.0 0.0, 0.0 -1.54
DBA/2J f 0.667 0.516   6 0.211 0.775 0.0, 1.0 -0.52
DBA/2J m 1.3 1.42   10 0.448 1.09 0.0, 4.0 -0.45
FVB/NJ f 0.917 0.793   12 0.229 0.865 0.0, 2.0 -0.26
FVB/NJ m 1.0 0.953   12 0.275 0.953 0.0, 2.0 -0.7
MOLF/EiJ m 1.8 1.62   10 0.512 0.9 0.0, 6.0 -0.03
SJL/J f 1.33 1.03   6 0.422 0.775 0.0, 3.0 0.16
SJL/J m 2.33 1.15   3 0.667 0.495 1.0, 3.0 0.41
SM/J m 1.0 0.894   6 0.365 0.894 0.0, 2.0 -0.7
SPRET/EiJ f 0.75 0.886   8 0.313 1.18 0.0, 2.0 -0.44
SPRET/EiJ m 2.0 0.0   1   0.0 0.0 2.0, 2.0 0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.9 0.4207 1.7306 0.0694
129S1/SvImJ m 1.7 0.4207 2.5306 0.8694
A/J f 0.4167 0.3841 1.1749 -0.3416
A/J m 2.5 0.5432 3.5723 1.4277
AKR/J f 3.25 0.3841 4.0083 2.4917
AKR/J m 5.0 0.5432 6.0723 3.9277
BALB/cByJ f 2.3182 0.2837 2.8782 1.7582
BALB/cByJ m 2.0 0.3841 2.7583 1.2417
BALB/cJ f 1.9286 0.3556 2.6306 1.2266
BALB/cJ m 2.4 0.4207 3.2306 1.5694
C57BL/6J f 0.4 0.4207 1.2306 -0.4306
C57BL/6J m 0.8889 0.4435 1.7645 0.0133
CAST/EiJ f 0.0 0.9408 1.8573 -1.8573
CAST/EiJ m 0.0 0.6653 1.3133 -1.3133
DBA/2J f 0.6667 0.5432 1.739 -0.4057
DBA/2J m 1.3 0.4207 2.1306 0.4694
FVB/NJ f 0.9167 0.3841 1.6749 0.1584
FVB/NJ m 1.0 0.3841 1.7583 0.2417
SJL/J f 1.3333 0.5432 2.4057 0.261
SJL/J m 2.3333 0.7682 3.8499 0.8168


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.3 0.2975 1.8873 0.7127
A/J both 1.4583 0.3326 2.115 0.8017
AKR/J both 4.125 0.3326 4.7817 3.4683
BALB/cByJ both 2.1591 0.2387 2.6304 1.6878
BALB/cJ both 2.1643 0.2754 2.7081 1.6205
C57BL/6J both 0.6444 0.3057 1.2479 0.041
CAST/EiJ both 0.0 0.5761 1.1374 -1.1374
DBA/2J both 0.9833 0.3435 1.6615 0.3051
FVB/NJ both 0.9583 0.2716 1.4945 0.4222
SJL/J both 1.8333 0.4704 2.762 0.9047




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.