Project measure / variable:   Brown1   stretch_EZM

ID, description, units MPD:9435   stretch_EZM   total stretch attends   [n]  
Data set, strains Brown1   inbred   13 strains     sex: both     age: 10wks
Procedure elevated zero maze
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  STRAIN COMPARISON PLOT
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Brown1 - total stretch attends



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains13 strains
Mean of the strain means9.45   n 7.90   n
Median of the strain means9.58   n 6.80   n
SD of the strain means± 7.46 ± 6.22
Coefficient of variation (CV)0.789 0.788
Min–max range of strain means0.500   –   22.9   n 0   –   18.6   n
Mean sample size per strain10.1   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 266.8685 266.8685 4.2723 0.0403
strain 9 7209.9682 801.1076 12.8248 < 0.0001
sex:strain 9 514.7777 57.1975 0.9157 0.513
Residuals 170 10619.1013 62.4653


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 7.2 4.42   10 1.4 0.613 1.0, 15.0 -0.3
129S1/SvImJ m 6.8 3.01   10 0.952 0.443 1.0, 12.0 -0.18
A/J f 12.0 8.62   12 2.49 0.719 1.0, 30.0 0.34
A/J m 16.7 8.29   6 3.38 0.497 4.0, 28.0 1.41
AKR/J f 9.58 5.76   12 1.66 0.601 1.0, 18.0 0.02
AKR/J m 10.8 4.75   6 1.94 0.439 6.0, 17.0 0.47
BALB/cByJ f 19.2 13.6   22 2.9 0.71 1.31
BALB/cByJ m 13.2 7.14   12 2.06 0.539 0.85
BALB/cJ f 22.9 11.0   14 2.94 0.479 8.0, 45.0 1.8
BALB/cJ m 18.6 13.5   10 4.28 0.727 5.0, 41.0 1.72
C57BL/6J f 12.4 3.66   10 1.16 0.295 7.0, 17.0 0.4
C57BL/6J m 13.2 4.89   10 1.55 0.371 6.0, 19.0 0.85
CAST/EiJ f 0.5 0.707   2   0.5 1.41 -1.2
CAST/EiJ m 0.6 1.34   5 0.6 2.24 -1.17
DBA/2J f 13.8 4.22   6 1.72 0.305 9.0, 21.0 0.58
DBA/2J m 8.7 7.36   10 2.33 0.846 0.13
FVB/NJ f 1.83 2.33   12 0.672 1.27 -1.02
FVB/NJ m 2.83 2.08   12 0.601 0.735 -0.81
MOLF/EiJ m 1.4 2.41   10 0.763 1.72 -1.04
SJL/J f 2.33 1.97   6 0.803 0.843 1.0, 6.0 -0.95
SJL/J m 3.33 0.577   3 0.333 0.173 3.0, 4.0 -0.73
SM/J m 6.5 5.01   6 2.05 0.771 2.0, 15.0 -0.22
SPRET/EiJ f 2.22 2.82   9 0.94 1.27 -0.97
SPRET/EiJ m 0.0 0.0   1   0.0 0.0 -1.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 7.2 2.4993 12.1337 2.2663
129S1/SvImJ m 6.8 2.4993 11.7337 1.8663
A/J f 12.0 2.2815 16.5038 7.4962
A/J m 16.6667 3.2266 23.036 10.2973
AKR/J f 9.5833 2.2815 14.0871 5.0795
AKR/J m 10.8333 3.2266 17.2027 4.464
BALB/cByJ f 19.1818 1.685 22.5081 15.8555
BALB/cByJ m 13.25 2.2815 17.7538 8.7462
BALB/cJ f 22.9286 2.1123 27.0983 18.7589
BALB/cJ m 18.6 2.4993 23.5337 13.6663
C57BL/6J f 12.4 2.4993 17.3337 7.4663
C57BL/6J m 13.2 2.4993 18.1337 8.2663
CAST/EiJ f 0.5 5.5886 11.532 0.0
CAST/EiJ m 0.6 3.5346 7.5773 0.0
DBA/2J f 13.8333 3.2266 20.2027 7.464
DBA/2J m 8.7 2.4993 13.6337 3.7663
FVB/NJ f 1.8333 2.2815 6.3371 0.0
FVB/NJ m 2.8333 2.2815 7.3371 0.0
SJL/J f 2.3333 3.2266 8.7027 0.0
SJL/J m 3.3333 4.5631 12.3409 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 7.0 1.7673 10.4886 3.5114
A/J both 14.3333 1.9759 18.2337 10.4329
AKR/J both 10.2083 1.9759 14.1087 6.3079
BALB/cByJ both 16.2159 1.4182 19.0154 13.4164
BALB/cJ both 20.7643 1.6362 23.9941 17.5344
C57BL/6J both 12.8 1.7673 16.2886 9.3114
CAST/EiJ both 0.55 3.3063 7.0766 0.0
DBA/2J both 11.2667 2.0407 15.295 7.2383
FVB/NJ both 2.3333 1.6133 5.518 0.0
SJL/J both 2.8333 2.7943 8.3493 0.0




  GWAS USING LINEAR MIXED MODELS