Phenotype measure:   Brown1   headip_EZM


  STRAIN COMPARISON PLOT
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Brown1 - total head-dips



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains13 strains
Mean of the strain means13.4   n 16.8   n
Median of the strain means14.9   n 15.3   n
SD of the strain means± 6.24 ± 7.69
Coefficient of variation (CV)0.464 0.458
Min–max range of strain means4.00   –   26.3   n 5.10   –   29.3   n
Mean sample size per strain10.1   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6.1364 6.1364 0.07 0.7916
strain 9 6547.8856 727.5428 8.3004 < 0.0001
sex:strain 9 505.4357 56.1595 0.6407 0.7611
Residuals 170 14900.837 87.652


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6.5 3.27   10 1.04 0.504 -1.11
129S1/SvImJ m 5.1 4.09   10 1.29 0.803 1.0, 13.0 -1.52
A/J f 15.7 8.23   12 2.38 0.525 1.0, 28.0 0.36
A/J m 19.7 3.88   6 1.58 0.197 14.0, 24.0 0.38
AKR/J f 10.8 9.65   12 2.79 0.898 1.0, 31.0 -0.42
AKR/J m 19.3 7.17   6 2.93 0.371 11.0, 27.0 0.33
BALB/cByJ f 16.2 7.79   22 1.66 0.481 4.0, 33.0 0.44
BALB/cByJ m 15.8 7.0   12 2.02 0.442 5.0, 28.0 -0.13
BALB/cJ f 14.9 17.2   14 4.58 1.15 0.23
BALB/cJ m 15.1 10.6   10 3.35 0.703 2.0, 37.0 -0.22
C57BL/6J f 15.3 10.9   10 3.44 0.711 6.0, 31.0 0.3
C57BL/6J m 11.8 12.0   10 3.79 1.02 -0.65
CAST/EiJ f 4.0 1.41   2   1.0 0.354 3.0, 5.0 -1.51
CAST/EiJ m 6.6 1.95   5 0.872 0.295 4.0, 9.0 -1.33
DBA/2J f 6.5 4.64   6 1.89 0.713 1.0, 15.0 -1.11
DBA/2J m 11.4 6.69   10 2.11 0.587 4.0, 25.0 -0.7
FVB/NJ f 26.3 8.26   12 2.38 0.314 15.0, 41.0 2.06
FVB/NJ m 28.0 9.5   12 2.74 0.339 11.0, 41.0 1.46
MOLF/EiJ m 15.3 10.7   10 3.39 0.701 3.0, 35.0 -0.2
SJL/J f 16.8 15.7   6 6.43 0.935 1.0, 47.0 0.54
SJL/J m 14.0 4.36   3 2.52 0.311 9.0, 17.0 -0.36
SM/J m 29.3 6.98   6 2.85 0.238 20.0, 38.0 1.63
SPRET/EiJ f 14.9 9.56   9 3.19 0.642 0.23
SPRET/EiJ m 27.0 0.0   1   0.0 0.0 27.0, 27.0 1.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6.5 2.9606 12.3443 0.6557
129S1/SvImJ m 5.1 2.9606 10.9443 0.0
A/J f 15.6667 2.7027 21.0017 10.3316
A/J m 19.6667 3.8221 27.2116 12.1217
AKR/J f 10.75 2.7027 16.0851 5.4149
AKR/J m 19.3333 3.8221 26.8783 11.7884
BALB/cByJ f 16.1818 1.996 20.122 12.2416
BALB/cByJ m 15.8333 2.7027 21.1684 10.4983
BALB/cJ f 14.8571 2.5022 19.7965 9.9178
BALB/cJ m 15.1 2.9606 20.9443 9.2557
C57BL/6J f 15.3 2.9606 21.1443 9.4557
C57BL/6J m 11.8 2.9606 17.6443 5.9557
CAST/EiJ f 4.0 6.6201 17.0682 0.0
CAST/EiJ m 6.6 4.1869 14.8651 0.0
DBA/2J f 6.5 3.8221 14.0449 0.0
DBA/2J m 11.4 2.9606 17.2443 5.5557
FVB/NJ f 26.3333 2.7027 31.6684 20.9983
FVB/NJ m 28.0 2.7027 33.3351 22.6649
SJL/J f 16.8333 3.8221 24.3783 9.2884
SJL/J m 14.0 5.4053 24.6702 3.3298


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.8 2.0935 9.9325 1.6675
A/J both 17.6667 2.3406 22.287 13.0464
AKR/J both 15.0417 2.3406 19.662 10.4214
BALB/cByJ both 16.0076 1.6799 19.3238 12.6914
BALB/cJ both 14.9786 1.9382 18.8046 11.1526
C57BL/6J both 13.55 2.0935 17.6825 9.4175
CAST/EiJ both 5.3 3.9165 13.0313 0.0
DBA/2J both 8.95 2.4173 13.7218 4.1782
FVB/NJ both 27.1667 1.9111 30.9391 23.3942
SJL/J both 15.4167 3.3101 21.9508 8.8826




  GWAS USING LINEAR MIXED MODELS