Phenotype measure:   Brown1   close_dur_EZM


  STRAIN COMPARISON PLOT
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Brown1 - closed zone duration



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains13 strains
Mean of the strain means187   s 185   s
Median of the strain means182   s 176   s
SD of the strain means± 40.2 ± 40.0
Coefficient of variation (CV)0.214 0.216
Min–max range of strain means130   –   251   s 126   –   243   s
Mean sample size per strain10.1   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1774.0669 1774.0669 0.5135 0.4746
strain 9 240955.1996 26772.8 7.7497 < 0.0001
sex:strain 9 26778.1444 2975.3494 0.8612 0.5611
Residuals 170 587300.8278 3454.7108


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 201.0 61.8   10 19.5 0.307 44.6, 251.0 0.34
129S1/SvImJ m 237.0 32.5   10 10.3 0.137 166.0, 272.0 1.3
A/J f 163.0 98.4   12 28.4 0.605 2.58, 300.0 -0.61
A/J m 126.0 66.5   6 27.2 0.528 47.5, 246.0 -1.47
AKR/J f 212.0 47.9   12 13.8 0.226 132.0, 272.0 0.61
AKR/J m 243.0 39.7   6 16.2 0.163 175.0, 284.0 1.45
BALB/cByJ f 150.0 79.4   22 16.9 0.531 -0.93
BALB/cByJ m 133.0 82.7   12 23.9 0.623 -1.3
BALB/cJ f 182.0 76.5   14 20.4 0.421 55.3, 289.0 -0.14
BALB/cJ m 176.0 69.2   10 21.9 0.393 85.7, 298.0 -0.22
C57BL/6J f 232.0 19.3   10 6.09 0.0831 204.0, 259.0 1.11
C57BL/6J m 241.0 22.8   10 7.2 0.0946 213.0, 273.0 1.4
CAST/EiJ f 230.0 7.78   2   5.5 0.0339 224.0, 235.0 1.06
CAST/EiJ m 214.0 30.5   5 13.6 0.142 185.0, 254.0 0.73
DBA/2J f 251.0 38.3   6 15.6 0.153 202.0, 295.0 1.58
DBA/2J m 206.0 16.7   10 5.28 0.0809 178.0, 232.0 0.53
FVB/NJ f 147.0 37.6   12 10.9 0.255 112.0, 227.0 -1.01
FVB/NJ m 155.0 36.8   12 10.6 0.237 102.0, 213.0 -0.75
MOLF/EiJ m 178.0 35.4   10 11.2 0.199 118.0, 243.0 -0.17
SJL/J f 164.0 15.0   6 6.11 0.0916 148.0, 188.0 -0.58
SJL/J m 172.0 28.1   3 16.2 0.163 140.0, 191.0 -0.32
SM/J m 152.0 67.7   6 27.6 0.445 46.3, 231.0 -0.82
SPRET/EiJ f 130.0 71.0   9 23.7 0.546 10.2, 227.0 -1.43
SPRET/EiJ m 171.0 0.0   1   0.0 0.0 171.0, 171.0 -0.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 201.16 18.5869 237.8508 164.4692
129S1/SvImJ m 237.2 18.5869 273.8908 200.5092
A/J f 162.59 16.9674 196.0839 129.0961
A/J m 126.0 23.9955 173.3676 78.6324
AKR/J f 211.5 16.9674 244.9939 178.0061
AKR/J m 243.3333 23.9955 290.7009 195.9658
BALB/cByJ f 149.55 12.5313 174.2869 124.8131
BALB/cByJ m 132.8167 16.9674 166.3106 99.3227
BALB/cJ f 181.5786 15.7088 212.5879 150.5692
BALB/cJ m 176.32 18.5869 213.0108 139.6292
C57BL/6J f 231.8 18.5869 268.4908 195.1092
C57BL/6J m 240.6 18.5869 277.2908 203.9092
CAST/EiJ f 229.5 41.5615 311.543 147.457
CAST/EiJ m 214.0 26.2858 265.8886 162.1114
DBA/2J f 250.8333 23.9955 298.2009 203.4658
DBA/2J m 206.3 18.5869 242.9908 169.6092
FVB/NJ f 147.25 16.9674 180.7439 113.7561
FVB/NJ m 155.0 16.9674 188.4939 121.5061
SJL/J f 163.5 23.9955 210.8676 116.1324
SJL/J m 172.3333 33.9348 239.3212 105.3455


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 219.18 13.1429 245.1243 193.2357
A/J both 144.295 14.6942 173.3016 115.2884
AKR/J both 227.4167 14.6942 256.4233 198.4101
BALB/cByJ both 141.1833 10.5466 162.0025 120.3641
BALB/cJ both 178.9493 12.168 202.969 154.9295
C57BL/6J both 236.2 13.1429 262.1443 210.2557
CAST/EiJ both 221.75 24.5881 270.2873 173.2127
DBA/2J both 228.5667 15.1761 258.5245 198.6088
FVB/NJ both 151.125 11.9978 174.8088 127.4412
SJL/J both 167.9167 20.7807 208.9382 126.8952




  GWAS USING LINEAR MIXED MODELS