Phenotype measure:   Brown1   stretch_EPM



  STRAIN COMPARISON PLOT
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Brown1 - total stretch attends



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means6.60   n 5.95   n
Median of the strain means5.64   n 6.50   n
SD of the strain means± 2.89 ± 3.21
Coefficient of variation (CV)0.439 0.540
Min–max range of strain means2.00   –   11.8   n 1.00   –   12.5   n
Mean sample size per strain12.5   mice 13.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 86.7514 86.7514 2.2227 0.137
strain 12 2664.3789 222.0316 5.6888 < 0.0001
sex:strain 12 358.8741 29.9062 0.7662 0.6852
Residuals 323 12606.5515 39.0296


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 9.75 10.3   12 2.96 1.05 0.0, 24.0 1.09
129S1/SvImJ m 6.5 5.07   12 1.46 0.78 0.0, 17.0 0.17
A/J f 11.1 8.85   12 2.55 0.798 1.0, 24.0 1.56
A/J m 12.5 11.2   19 2.56 0.891 0.0, 37.0 2.04
AKR/J f 5.5 3.71   12 1.07 0.674 0.0, 15.0 -0.38
AKR/J m 7.37 6.1   19 1.4 0.828 0.0, 18.0 0.44
BALB/cByJ f 11.8 7.14   22 1.52 0.604 2.0, 25.0 1.8
BALB/cByJ m 8.17 7.11   12 2.05 0.87 2.0, 25.0 0.69
BALB/cJ f 8.43 9.02   14 2.41 1.07 0.0, 35.0 0.63
BALB/cJ m 7.42 7.46   12 2.15 1.01 0.0, 21.0 0.46
C3H/HeJ f 7.79 5.32   19 1.22 0.683 1.0, 21.0 0.41
C3H/HeJ m 6.72 4.8   18 1.13 0.714 1.0, 17.0 0.24
C57BL/6J f 7.17 3.79   12 1.09 0.528 2.0, 17.0 0.2
C57BL/6J m 5.54 3.41   13 0.945 0.615 0.0, 11.0 -0.13
CAST/EiJ f 3.82 5.06   11 1.52 1.32 0.0, 15.0 -0.96
CAST/EiJ m 2.58 4.91   12 1.42 1.9 0.0, 14.0 -1.05
DBA/2J f 5.31 4.79   13 1.33 0.902 0.0, 14.0 -0.44
DBA/2J m 4.0 4.93   13 1.37 1.23 0.0, 15.0 -0.61
FVB/NJ f 5.25 3.31   12 0.954 0.63 0.0, 10.0 -0.47
FVB/NJ m 4.75 3.82   12 1.1 0.804 1.0, 14.0 -0.37
MOLF/EiJ f 5.36 3.44   11 1.04 0.642 1.0, 11.0 -0.43
MOLF/EiJ m 1.0 0.775   11 0.234 0.775 0.0, 2.0 -1.54
SJL/J f 3.31 2.93   13 0.812 0.885 0.0, 9.0 -1.14
SJL/J m 1.58 1.68   12 0.484 1.06 0.0, 5.0 -1.36
SM/J f 5.78 6.69   9 2.23 1.16 0.0, 19.0 -0.28
SM/J m 9.17 8.33   12 2.41 0.909 0.0, 24.0 1.0
SPRET/EiJ f 2.0 0.0   1   0.0 0.0 2.0, 2.0 -1.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 9.75 1.8035 13.298 6.202
129S1/SvImJ m 6.5 1.8035 10.048 2.952
A/J f 11.0833 1.8035 14.6313 7.5353
A/J m 12.5263 1.4332 15.346 9.7066
AKR/J f 5.5 1.8035 9.048 1.952
AKR/J m 7.3684 1.4332 10.1881 4.5487
BALB/cByJ f 11.8182 1.3319 14.4386 9.1978
BALB/cByJ m 8.1667 1.8035 11.7147 4.6187
BALB/cJ f 8.4286 1.6697 11.7134 5.1438
BALB/cJ m 7.4167 1.8035 10.9647 3.8687
C3H/HeJ f 7.7895 1.4332 10.6091 4.9698
C3H/HeJ m 6.7222 1.4725 9.6192 3.8253
C57BL/6J f 7.1667 1.8035 10.7147 3.6187
C57BL/6J m 5.5385 1.7327 8.9473 2.1296
CAST/EiJ f 3.8182 1.8837 7.524 0.1124
CAST/EiJ m 2.5833 1.8035 6.1313 0.0
DBA/2J f 5.3077 1.7327 8.7165 1.8989
DBA/2J m 4.0 1.7327 7.4088 0.5912
FVB/NJ f 5.25 1.8035 8.798 1.702
FVB/NJ m 4.75 1.8035 8.298 1.202
MOLF/EiJ f 5.3636 1.8837 9.0694 1.6579
MOLF/EiJ m 1.0 1.8837 4.7058 0.0
SJL/J f 3.3077 1.7327 6.7165 0.0
SJL/J m 1.5833 1.8035 5.1313 0.0
SM/J f 5.7778 2.0825 9.8747 1.6809
SM/J m 9.1667 1.8035 12.7147 5.6187


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 8.125 1.2752 10.6338 5.6162
A/J both 11.8048 1.1518 14.0708 9.5388
AKR/J both 6.4342 1.1518 8.7002 4.1682
BALB/cByJ both 9.9924 1.121 12.1978 7.787
BALB/cJ both 7.9226 1.2289 10.3402 5.5051
C3H/HeJ both 7.2558 1.0274 9.2772 5.2345
C57BL/6J both 6.3526 1.2505 8.8127 3.8925
CAST/EiJ both 3.2008 1.3039 5.766 0.6356
DBA/2J both 4.6538 1.2252 7.0642 2.2434
FVB/NJ both 5.0 1.2752 7.5088 2.4912
MOLF/EiJ both 3.1818 1.3319 5.8022 0.5614
SJL/J both 2.4455 1.2505 4.9056 0.0
SM/J both 7.4722 1.3774 10.1821 4.7624




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.