Phenotype measure:   Brown1   close_dur_EPM


  STRAIN COMPARISON PLOT
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Brown1 - closed arms duration



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains13 strains
Mean of the strain means122   s 96.0   s
Median of the strain means116   s 105   s
SD of the strain means± 61.3 ± 35.2
Coefficient of variation (CV)0.501 0.367
Min–max range of strain means41.9   –   262   s 37.5   –   140   s
Mean sample size per strain11.4   mice 12.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 12304.5289 12304.5289 5.9408 0.0154
strain 12 471168.5383 39264.0449 18.9573 < 0.0001
sex:strain 12 95183.2625 7931.9385 3.8297 < 0.0001
Residuals 302 625496.9768 2071.182


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 71.9 37.3   12 10.8 0.519 2.25, 125.0 -0.82
129S1/SvImJ m 105.0 52.9   12 15.3 0.506 5.75, 152.0 0.25
A/J f 127.0 72.7   12 21.0 0.573 0.07
A/J m 73.9 56.1   17 13.6 0.759 -0.63
AKR/J f 218.0 37.2   12 10.7 0.171 162.0, 291.0 1.56
AKR/J m 140.0 52.1   19 12.0 0.372 67.0, 251.0 1.25
BALB/cByJ f 41.9 41.9   22 8.93 1.0 -1.31
BALB/cByJ m 54.0 63.9   12 18.4 1.18 -1.19
BALB/cJ f 114.0 73.3   13 20.3 0.645 14.5, 247.0 -0.14
BALB/cJ m 37.5 40.2   12 11.6 1.07 -1.66
C3H/HeJ f 73.1 33.6   15 8.67 0.459 33.5, 153.0 -0.81
C3H/HeJ m 67.9 34.1   16 8.53 0.503 2.08, 139.0 -0.8
C57BL/6J f 138.0 39.1   12 11.3 0.284 72.0, 207.0 0.25
C57BL/6J m 128.0 25.7   12 7.42 0.201 95.5, 177.0 0.91
CAST/EiJ f 81.6 44.0   5 19.7 0.539 29.3, 144.0 -0.67
CAST/EiJ m 78.5 19.5   10 6.17 0.248 55.3, 110.0 -0.5
DBA/2J f 172.0 77.0   12 22.2 0.446 18.0, 280.0 0.81
DBA/2J m 137.0 39.2   13 10.9 0.285 58.0, 182.0 1.16
FVB/NJ f 118.0 31.8   12 9.17 0.27 63.7, 163.0 -0.07
FVB/NJ m 123.0 23.6   12 6.81 0.191 79.1, 152.0 0.76
MOLF/EiJ f 113.0 43.1   11 13.0 0.381 55.7, 180.0 -0.15
MOLF/EiJ m 130.0 35.4   11 10.7 0.272 76.2, 217.0 0.96
SJL/J f 126.0 34.0   13 9.44 0.27 78.2, 190.0 0.06
SJL/J m 113.0 24.6   12 7.11 0.218 67.8, 150.0 0.48
SM/J f 57.8 30.4   8 10.7 0.526 17.4, 107.0 -1.05
SM/J m 60.8 39.0   11 11.8 0.642 10.2, 128.0 -1.0
SPRET/EiJ f 262.0 0.0   1   0.0 0.0 262.0, 262.0 2.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 71.8542 13.1377 97.7071 46.0012
129S1/SvImJ m 104.6667 13.1377 130.5196 78.8137
A/J f 126.8667 13.1377 152.7196 101.0137
A/J m 73.8824 11.0379 95.6032 52.1615
AKR/J f 217.8333 13.1377 243.6863 191.9804
AKR/J m 139.9947 10.4408 160.5406 119.4489
BALB/cByJ f 41.87 9.7028 60.9637 22.7763
BALB/cByJ m 54.0208 13.1377 79.8738 28.1679
BALB/cJ f 113.6077 12.6223 138.4464 88.769
BALB/cJ m 37.5169 13.1377 63.3699 11.6639
C3H/HeJ f 73.1133 11.7507 96.2369 49.9897
C3H/HeJ m 67.88 11.3776 90.2693 45.4907
C57BL/6J f 137.825 13.1377 163.678 111.972
C57BL/6J m 127.9583 13.1377 153.8113 102.1054
CAST/EiJ f 81.56 20.3528 121.6113 41.5087
CAST/EiJ m 78.52 14.3916 106.8405 50.1995
DBA/2J f 172.5 13.1377 198.353 146.647
DBA/2J m 137.3615 12.6223 162.2003 112.5228
FVB/NJ f 117.5417 13.1377 143.3946 91.6887
FVB/NJ m 123.2417 13.1377 149.0946 97.3887
MOLF/EiJ f 113.1 13.7219 140.1026 86.0974
MOLF/EiJ m 130.3818 13.7219 157.3844 103.3793
SJL/J f 125.9077 12.6223 150.7464 101.069
SJL/J m 113.0083 13.1377 138.8613 87.1554
SM/J f 57.7875 16.0903 89.4508 26.1242
SM/J m 60.7818 13.7219 87.7844 33.7793


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 88.2604 9.2897 106.5412 69.9796
A/J both 100.3745 8.5795 117.2577 83.4913
AKR/J both 178.914 8.3906 195.4255 162.4026
BALB/cByJ both 47.9454 8.1661 64.0152 31.8757
BALB/cJ both 75.5623 9.1093 93.4881 57.6365
C3H/HeJ both 70.4967 8.1781 86.59 54.4033
C57BL/6J both 132.8917 9.2897 151.1725 114.6109
CAST/EiJ both 80.04 12.4635 104.5663 55.5137
DBA/2J both 154.9308 9.1093 172.8566 137.005
FVB/NJ both 120.3917 9.2897 138.6725 102.1109
MOLF/EiJ both 121.7409 9.7028 140.8346 102.6472
SJL/J both 119.458 9.1093 137.3838 101.5322
SM/J both 59.2847 10.5734 80.0915 38.4778




  GWAS USING LINEAR MIXED MODELS