Project measure / variable:   Brown1   freeze_d1_OFT

ID, description, units MPD:9411   freeze_d1_OFT   freezing duration, day 1   [s]  
Data set, strains Brown1   inbred   14 strains     sex: both     age: 10wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Brown1 - freezing duration, day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested14 strains14 strains
Mean of the strain means11.7   s 10.3   s
Median of the strain means3.17   s 3.40   s
SD of the strain means± 15.3 ± 13.0
Coefficient of variation (CV)1.31 1.26
Min–max range of strain means0   –   39.1   s 0.0458   –   35.2   s
Mean sample size per strain12.8   mice 13.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 501.2362 501.2362 0.9709 0.3252
strain 13 69448.0082 5342.1545 10.3474 < 0.0001
sex:strain 13 8135.6105 625.8162 1.2122 0.2684
Residuals 344 177600.1463 516.2795


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 35.0 34.7   12 10.0 0.991 1.53
129S1/SvImJ m 35.2 39.0   12 11.3 1.11 1.91
A/J f 16.9 27.0   12 7.81 1.6 0.34
A/J m 34.0 32.5   20 7.27 0.955 6.25, 149.0 1.82
AKR/J f 0.444 0.793   12 0.229 1.79 -0.74
AKR/J m 2.24 5.44   19 1.25 2.43 -0.62
BALB/cByJ f 39.1 44.5   22 9.49 1.14 1.79
BALB/cByJ m 17.2 25.8   12 7.44 1.5 0.53
BALB/cJ f 35.0 52.0   14 13.9 1.48 1.53
BALB/cJ m 28.2 42.4   12 12.2 1.5 1.37
C3H/HeJ f 0.283 0.72   18 0.17 2.54 -0.75
C3H/HeJ m 0.251 0.687   16 0.172 2.74 -0.77
C57BL/6J f 1.46 3.56   12 1.03 2.44 -0.67
C57BL/6J m 4.56 7.21   13 2.0 1.58 -0.44
CAST/EiJ f 5.06 6.38   10 2.02 1.26 -0.43
CAST/EiJ m 10.4 18.4   10 5.81 1.77 0.01
DBA/2J f 0.388 0.576   14 0.154 1.49 -0.74
DBA/2J m 0.495 1.03   13 0.284 2.07 -0.75
FVB/NJ f 0.0 0.0   12 0.0 0.0 -0.77
FVB/NJ m 0.0458 0.159   12 0.0458 3.46 -0.79
MOLF/EiJ f 0.167 0.389   12 0.112 2.34 -0.76
MOLF/EiJ m 0.535 0.978   11 0.295 1.83 -0.75
SJL/J f 0.0 0.0   13 0.0 0.0 -0.77
SJL/J m 0.917 2.87   12 0.83 3.14 -0.72
SM/J f 4.88 12.5   10 3.95 2.56 -0.45
SM/J m 2.25 5.83   12 1.68 2.59 -0.62
SPRET/EiJ f 25.1 24.8   13 6.89 0.988 0.72, 79.9 0.88
SPRET/EiJ m 7.92 12.6   12 3.64 1.59 -0.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 34.9867 6.5592 47.8879 22.0855
129S1/SvImJ m 35.2433 6.5592 48.1445 22.3421
A/J f 16.93 6.5592 29.8312 4.0288
A/J m 34.0185 5.0807 44.0117 24.0253
AKR/J f 0.4442 6.5592 13.3454 -12.457
AKR/J m 2.2405 5.2127 12.4934 -8.0123
BALB/cByJ f 39.0641 4.8443 48.5923 29.5359
BALB/cByJ m 17.1508 6.5592 30.052 4.2496
BALB/cJ f 35.0393 6.0727 46.9835 23.0951
BALB/cJ m 28.1708 6.5592 41.072 15.2696
C3H/HeJ f 0.2833 5.3556 10.8171 -10.2505
C3H/HeJ m 0.2506 5.6804 11.4234 -10.9222
C57BL/6J f 1.4592 6.5592 14.3604 -11.442
C57BL/6J m 4.5585 6.3019 16.9535 -7.8366
CAST/EiJ f 5.057 7.1853 19.1896 -9.0756
CAST/EiJ m 10.395 7.1853 24.5276 -3.7376
DBA/2J f 0.3879 6.0727 12.3321 -11.5563
DBA/2J m 0.4946 6.3019 12.8897 -11.9005
FVB/NJ f 0.0 6.5592 12.9012 -12.9012
FVB/NJ m 0.0458 6.5592 12.947 -12.8554
MOLF/EiJ f 0.1667 6.5592 13.0679 -12.7345
MOLF/EiJ m 0.5345 6.8509 14.0094 -12.9403
SJL/J f 0.0 6.3019 12.3951 -12.3951
SJL/J m 0.9167 6.5592 13.8179 -11.9845
SM/J f 4.875 7.1853 19.0076 -9.2576
SM/J m 2.25 6.5592 15.1512 -10.6512
SPRET/EiJ f 25.1492 6.3019 37.5443 12.7541
SPRET/EiJ m 7.915 6.5592 20.8162 -4.9862


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 35.115 4.6381 44.2375 25.9925
A/J both 25.4742 4.1484 33.6337 17.3148
AKR/J both 1.3423 4.1891 9.5819 -6.8972
BALB/cByJ both 28.1075 4.0771 36.1266 20.0883
BALB/cJ both 31.6051 4.4694 40.3958 22.8144
C3H/HeJ both 0.267 3.9035 7.9447 -7.4108
C57BL/6J both 3.0088 4.548 11.9542 -5.9366
CAST/EiJ both 7.726 5.0807 17.7192 -2.2672
DBA/2J both 0.4412 4.3758 9.048 -8.1655
FVB/NJ both 0.0229 4.6381 9.1455 -9.0996
MOLF/EiJ both 0.3506 4.7423 9.6782 -8.977
SJL/J both 0.4583 4.548 9.4037 -8.487
SM/J both 3.5625 4.8644 13.1303 -6.0053
SPRET/EiJ both 16.5321 4.548 25.4775 7.5867




  GWAS USING LINEAR MIXED MODELS