Project measure / variable:   Seburn1   ra_dark

ID, description, units MPD:9231   ra_dark   rearing activity, beam breaks per min, 3 day test   [n/min]  dark  
Data set, strains Seburn1   inbred   16 strains     sex: both     age: 7-9wks
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  STRAIN COMPARISON PLOT
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Seburn1 - rearing activity, beam breaks per min, 3 day test dark



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested15 strains16 strains
Mean of the strain means8.77   n/min 6.37   n/min
Median of the strain means8.81   n/min 5.45   n/min
SD of the strain means± 4.10 ± 3.68
Coefficient of variation (CV)0.468 0.578
Min–max range of strain means1.90   –   18.5   n/min 0.841   –   11.8   n/min
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 280.3249 280.3249 19.9391 < 0.0001
strain 14 3056.6917 218.3351 15.5299 < 0.0001
sex:strain 14 351.5401 25.11 1.786 0.0423
Residuals 210 2952.396 14.059


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.9 1.43   8 0.505 0.751 0.59, 4.59 -1.67
129S1/SvImJ m 2.49 1.86   8 0.657 0.747 0.82, 5.92 -1.05
A/J f 9.41 4.25   8 1.5 0.452 3.19, 15.4 0.16
A/J m 10.8 4.94   8 1.75 0.459 5.59, 18.5 1.2
AKR/J f 10.3 4.32   8 1.53 0.418 3.5, 16.1 0.37
AKR/J m 5.69 1.38   8 0.489 0.243 4.19, 8.16 -0.19
BALB/cJ f 10.2 3.71   8 1.31 0.365 6.7, 18.6 0.35
BALB/cJ m 10.7 3.48   8 1.23 0.326 4.04, 15.2 1.17
BTBR T+ Itpr3tf/J f 10.9 3.77   8 1.33 0.345 3.82, 15.9 0.52
BTBR T+ Itpr3tf/J m 11.1 4.57   8 1.62 0.411 5.97, 20.8 1.28
C3H/HeJ f 8.81 4.93   8 1.74 0.559 5.11, 19.8 0.01
C3H/HeJ m 4.74 1.45   8 0.512 0.305 3.23, 7.5 -0.44
C57BL/6J f 8.44 1.83   8 0.648 0.217 6.24, 10.5 -0.08
C57BL/6J m 4.67 1.27   8 0.451 0.273 2.97, 6.48 -0.46
CAST/EiJ f 18.5 7.36   8 2.6 0.397 12.8, 34.8 2.37
CAST/EiJ m 10.3 5.24   8 1.85 0.51 3.49, 20.0 1.07
CBA/J f 5.8 2.08   8 0.737 0.36 2.4, 9.73 -0.72
CBA/J m 2.75 0.561   8 0.198 0.204 1.95, 3.83 -0.98
FVB/NJ f 8.49 4.51   8 1.59 0.531 2.02, 14.9 -0.07
FVB/NJ m 6.9 3.42   8 1.21 0.495 4.53, 14.7 0.14
LP/J f 2.11 1.57   8 0.555 0.745 0.42, 4.84 -1.62
LP/J m 0.841 0.87   8 0.308 1.03 0.11, 2.77 -1.5
NOD/ShiLtJ f 13.5 7.81   8 2.76 0.58 6.67, 30.7 1.15
NOD/ShiLtJ m 11.8 2.49   8 0.882 0.21 8.68, 15.9 1.47
NZB/BlNJ f 5.93 4.21   8 1.49 0.71 2.08, 15.2 -0.69
NZB/BlNJ m 2.62 1.29   8 0.456 0.493 0.49, 4.44 -1.02
PL/J f 9.26 4.5   8 1.59 0.486 4.43, 16.0 0.12
PL/J m 8.54 3.27   8 1.16 0.383 3.87, 12.3 0.59
SJL/J m 2.8 0.752   8 0.266 0.269 1.76, 4.0 -0.97
SWR/J f 8.01 3.48   8 1.23 0.434 3.25, 14.5 -0.19
SWR/J m 5.21 3.15   8 1.11 0.604 1.74, 11.4 -0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.9025 1.3257 4.5158 0.0
129S1/SvImJ m 2.4887 1.3257 5.1021 0.0
A/J f 9.4137 1.3257 12.0271 6.8004
A/J m 10.7588 1.3257 13.3721 8.1454
AKR/J f 10.3263 1.3257 12.9396 7.7129
AKR/J m 5.69 1.3257 8.3033 3.0767
BALB/cJ f 10.1588 1.3257 12.7721 7.5454
BALB/cJ m 10.6925 1.3257 13.3058 8.0792
BTBR T+ Itpr3tf/J f 10.9375 1.3257 13.5508 8.3242
BTBR T+ Itpr3tf/J m 11.1275 1.3257 13.7408 8.5142
C3H/HeJ f 8.8062 1.3257 11.4196 6.1929
C3H/HeJ m 4.7375 1.3257 7.3508 2.1242
C57BL/6J f 8.4425 1.3257 11.0558 5.8292
C57BL/6J m 4.6725 1.3257 7.2858 2.0592
CAST/EiJ f 18.5125 1.3257 21.1258 15.8992
CAST/EiJ m 10.2762 1.3257 12.8896 7.6629
CBA/J f 5.7963 1.3257 8.4096 3.1829
CBA/J m 2.7488 1.3257 5.3621 0.1354
FVB/NJ f 8.4937 1.3257 11.1071 5.8804
FVB/NJ m 6.895 1.3257 9.5083 4.2817
LP/J f 2.1088 1.3257 4.7221 0.0
LP/J m 0.8413 1.3257 3.4546 0.0
NOD/ShiLtJ f 13.465 1.3257 16.0783 10.8517
NOD/ShiLtJ m 11.8475 1.3257 14.4608 9.2342
NZB/BlNJ f 5.9275 1.3257 8.5408 3.3142
NZB/BlNJ m 2.6163 1.3257 5.2296 0.0029
PL/J f 9.2612 1.3257 11.8746 6.6479
PL/J m 8.5375 1.3257 11.1508 5.9242
SWR/J f 8.01 1.3257 10.6233 5.3967
SWR/J m 5.21 1.3257 7.8233 2.5967


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.1956 0.9374 4.0435 0.3477
A/J both 10.0862 0.9374 11.9341 8.2384
AKR/J both 8.0081 0.9374 9.856 6.1602
BALB/cJ both 10.4256 0.9374 12.2735 8.5777
BTBR T+ Itpr3tf/J both 11.0325 0.9374 12.8804 9.1846
C3H/HeJ both 6.7719 0.9374 8.6198 4.924
C57BL/6J both 6.5575 0.9374 8.4054 4.7096
CAST/EiJ both 14.3944 0.9374 16.2423 12.5465
CBA/J both 4.2725 0.9374 6.1204 2.4246
FVB/NJ both 7.6944 0.9374 9.5423 5.8465
LP/J both 1.475 0.9374 3.3229 0.0
NOD/ShiLtJ both 12.6562 0.9374 14.5041 10.8084
NZB/BlNJ both 4.2719 0.9374 6.1198 2.424
PL/J both 8.8994 0.9374 10.7473 7.0515
SWR/J both 6.61 0.9374 8.4579 4.7621




  GWAS USING LINEAR MIXED MODELS