Project measure / variable:   Seburn1   ra_daily

ID, description, units MPD:9229   ra_daily   rearing activity, beam breaks per min, 3 day test   [n/min]  daily  
Data set, strains Seburn1   inbred   16 strains     sex: both     age: 7-9wks
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  STRAIN COMPARISON PLOT
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Seburn1 - rearing activity, beam breaks per min, 3 day test daily



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested15 strains16 strains
Mean of the strain means5.89   n/min 4.49   n/min
Median of the strain means5.96   n/min 4.18   n/min
SD of the strain means± 3.11 ± 2.61
Coefficient of variation (CV)0.529 0.580
Min–max range of strain means1.10   –   13.8   n/min 0.525   –   8.59   n/min
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 92.529 92.529 15.8753 0.0001
strain 14 1671.9743 119.4267 20.4901 < 0.0001
sex:strain 14 187.0682 13.362 2.2925 0.0061
Residuals 210 1223.9841 5.8285


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.1 0.825   8 0.292 0.751 0.3, 2.69 -1.54
129S1/SvImJ m 1.55 1.12   8 0.396 0.722 0.5, 3.4 -1.13
A/J f 5.4 2.26   8 0.799 0.419 2.0, 8.6 -0.16
A/J m 6.14 2.52   8 0.892 0.411 3.5, 10.2 0.63
AKR/J f 6.04 2.35   8 0.832 0.39 2.2, 9.1 0.05
AKR/J m 3.7 0.986   8 0.348 0.266 2.8, 5.6 -0.3
BALB/cJ f 6.56 2.24   8 0.792 0.341 4.8, 11.8 0.22
BALB/cJ m 7.53 2.17   8 0.767 0.288 3.3, 10.6 1.16
BTBR T+ Itpr3tf/J f 6.82 2.35   8 0.833 0.345 2.4, 9.8 0.3
BTBR T+ Itpr3tf/J m 7.04 2.85   8 1.01 0.406 4.1, 13.1 0.98
C3H/HeJ f 5.02 2.61   8 0.923 0.519 2.9, 10.7 -0.28
C3H/HeJ m 2.81 0.753   8 0.266 0.268 2.07, 4.2 -0.65
C57BL/6J f 5.83 1.08   8 0.381 0.185 4.5, 7.1 -0.02
C57BL/6J m 3.23 0.994   8 0.351 0.308 1.8, 4.8 -0.48
CAST/EiJ f 13.8 4.89   8 1.73 0.354 8.7, 22.6 2.54
CAST/EiJ m 7.6 3.55   8 1.25 0.467 2.8, 13.3 1.19
CBA/J f 3.69 1.19   8 0.421 0.323 1.7, 5.7 -0.71
CBA/J m 1.89 0.449   8 0.159 0.238 1.3, 2.8 -1.0
FVB/NJ f 7.01 3.75   8 1.33 0.535 1.9, 11.4 0.36
FVB/NJ m 6.49 3.36   8 1.19 0.517 3.6, 14.0 0.77
LP/J f 1.34 1.01   8 0.358 0.757 0.3, 3.0 -1.46
LP/J m 0.525 0.459   8 0.162 0.874 0.1, 1.5 -1.52
NOD/ShiLtJ f 9.94 5.17   8 1.83 0.521 5.6, 20.9 1.3
NOD/ShiLtJ m 8.59 1.34   8 0.475 0.157 7.1, 11.4 1.57
NZB/BlNJ f 3.75 2.38   8 0.843 0.636 1.4, 8.8 -0.69
NZB/BlNJ m 1.62 0.77   8 0.272 0.474 0.3, 2.8 -1.1
PL/J f 6.03 2.78   8 0.983 0.461 2.8, 10.3 0.05
PL/J m 6.32 2.13   8 0.752 0.336 3.5, 8.7 0.7
SJL/J m 2.19 0.411   8 0.145 0.188 1.7, 2.9 -0.88
SWR/J f 5.96 2.36   8 0.833 0.395 2.8, 9.4 0.02
SWR/J m 4.66 2.16   8 0.763 0.463 2.4, 8.4 0.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.0987 0.8536 2.7814 0.0
129S1/SvImJ m 1.55 0.8536 3.2326 0.0
A/J f 5.4 0.8536 7.0826 3.7174
A/J m 6.1375 0.8536 7.8201 4.4549
AKR/J f 6.0375 0.8536 7.7201 4.3549
AKR/J m 3.7 0.8536 5.3826 2.0174
BALB/cJ f 6.5625 0.8536 8.2451 4.8799
BALB/cJ m 7.525 0.8536 9.2076 5.8424
BTBR T+ Itpr3tf/J f 6.825 0.8536 8.5076 5.1424
BTBR T+ Itpr3tf/J m 7.0375 0.8536 8.7201 5.3549
C3H/HeJ f 5.025 0.8536 6.7076 3.3424
C3H/HeJ m 2.8088 0.8536 4.4914 1.1261
C57BL/6J f 5.825 0.8536 7.5076 4.1424
C57BL/6J m 3.225 0.8536 4.9076 1.5424
CAST/EiJ f 13.825 0.8536 15.5076 12.1424
CAST/EiJ m 7.6 0.8536 9.2826 5.9174
CBA/J f 3.6875 0.8536 5.3701 2.0049
CBA/J m 1.8875 0.8536 3.5701 0.2049
FVB/NJ f 7.0125 0.8536 8.6951 5.3299
FVB/NJ m 6.4875 0.8536 8.1701 4.8049
LP/J f 1.3375 0.8536 3.0201 0.0
LP/J m 0.525 0.8536 2.2076 0.0
NOD/ShiLtJ f 9.9375 0.8536 11.6201 8.2549
NOD/ShiLtJ m 8.5875 0.8536 10.2701 6.9049
NZB/BlNJ f 3.75 0.8536 5.4326 2.0674
NZB/BlNJ m 1.625 0.8536 3.3076 0.0
PL/J f 6.025 0.8536 7.7076 4.3424
PL/J m 6.325 0.8536 8.0076 4.6424
SWR/J f 5.9625 0.8536 7.6451 4.2799
SWR/J m 4.6625 0.8536 6.3451 2.9799


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.3244 0.6036 2.5142 0.1346
A/J both 5.7687 0.6036 6.9586 4.5789
AKR/J both 4.8688 0.6036 6.0586 3.6789
BALB/cJ both 7.0438 0.6036 8.2336 5.8539
BTBR T+ Itpr3tf/J both 6.9313 0.6036 8.1211 5.7414
C3H/HeJ both 3.9169 0.6036 5.1067 2.7271
C57BL/6J both 4.525 0.6036 5.7148 3.3352
CAST/EiJ both 10.7125 0.6036 11.9023 9.5227
CBA/J both 2.7875 0.6036 3.9773 1.5977
FVB/NJ both 6.75 0.6036 7.9398 5.5602
LP/J both 0.9313 0.6036 2.1211 0.0
NOD/ShiLtJ both 9.2625 0.6036 10.4523 8.0727
NZB/BlNJ both 2.6875 0.6036 3.8773 1.4977
PL/J both 6.175 0.6036 7.3648 4.9852
SWR/J both 5.3125 0.6036 6.5023 4.1227




  GWAS USING LINEAR MIXED MODELS